requirements.txt

anndata==0.9.1
blosc2==2.0.0
click==8.1.3
contourpy==1.1.0
cutadapt==3.7
cycler==0.11.0
Cython==0.29.35
dnaio==0.10.0
environs==9.5.0
fonttools==4.40.0
greenlet==2.0.2
h5py==3.9.0
igraph==0.10.4
isal==1.1.0
Jinja2==3.1.2
joblib==1.2.0
kiwisolver==1.4.4
leidenalg==0.9.1
llvmlite==0.40.1
louvain==0.8.0
MarkupSafe==2.1.3
marshmallow==3.19.0
matplotlib==3.6.3
mizani==0.9.2
msgpack==1.0.5
natsort==8.4.0
networkx==3.1
numba==0.57.1
numexpr==2.8.4
numpy==1.24.4
packaging==23.1
pandas==1.5.3
patsy==0.5.3
Pillow==9.5.0
plotly==5.15.0
plotnine==0.12.1
py-cpuinfo==9.0.0
pynndescent==0.5.10
pyparsing==3.1.0
pysam==0.21.0
python-dateutil==2.8.2
python-dotenv==1.0.0
pytz==2023.3
scanpy==1.8.2
scikit-learn==1.2.2
scipy==1.11.0
seaborn==0.12.2
sinfo==0.3.4
six==1.16.0
SQLAlchemy==1.4.40
statsmodels==0.14.0
stdlib-list==0.9.0
tables==3.8.0
tenacity==8.2.2
texttable==1.6.7
threadpoolctl==3.1.0
tqdm==4.65.0
tzdata==2023.3
umap-learn==0.5.3
xopen==1.7.0