consensus.mat

! This matrix is the standard MDM78, but with additional types for consensus alignment
! derived by (approximate) averaging of the included types.
!       ~ - Acidic.
!       ! - Hydrophobic.
!       @ - Amido.
!       # - Aromatic.
!       $ - Basic.
!       % - Hydroxyl containing.
!       ^ - Proline.
!       & - Sulphur containing.

 C  S  T  P  A  G  N  D  E  Q  B  Z  H  R  K  M  I  L  V  F  Y  W  -  X  ?  ~  !  @  #  $  %  ^  &
20 10  8  7  8  7  6  5  5  5  5  5  7  6  5  5  8  4  8  6 10  2 10 10 10  5  8 10  6  6  9  7 13
10 12 11 11 11 11 11 10 10  9 10 10  9 10 10  8  9  7  9  7  7  8 10 10 10 10  8 10  7 10 10 11  9
 8 11 13 10 11 10 10 10 10  9 10 10  9  9 10  9 10  8 10  7  7  5 10 10 10 10  8 10  7  9 10 10  9
 7 11 10 16 11  9  9  9  9 10  9 10 10 10  9  8  8  7  9  5  5  4 10 10 10  9  7 10  5 10  9 16  8
 8 11 11 11 12 11 10 10 10 10 10 10  9  8  9  9  9  8 10  6  7  4 10 10 10 10  7 10  6  9  9 11  9
 7 11 10  9 11 15 10 11 10  9 10 10  8  7  8  7  7  6  9  5  5  3 10 10 10 11  7 10  5  8  8  9  7
 6 11 10  9 10 10 12 12 11 11 12 11 12 10 11  8  8  7  8  6  8  6 10 10 10 12  7 10  7 11  9  9  7
 5 10 10  9 10 11 12 14 13 12 13 12 11  9 10  7  8  6  8  4  6  3 10 10 10 14  7 10  5 10  8  9  6
 5 10 10  9 10 10 11 13 14 12 12 13 11  9 10  8  8  7  8  5  6  3 10 10 10 14  7 10  5 10  8  9  7
 5  9  9 10 10  9 11 12 12 14 11 13 13 11 11  9  8  8  8  5  6  5 10 10 10 12  7 10  6 12  8 10  8
 5 10 10  9 10 10 12 13 12 11 13 11 11 10 10  8  8  6  8  5  7  4 10 10 10 13  7 10  6 10  8  9  7
 5 10 10 10 10 10 11 12 13 13 11 14 12 10 10  8  8  8  8  5  6  4 10 10 10 13  7 10  5 11  9 10  7
 7  9  9 10  9  8 12 11 11 13 11 12 16 12 10  8  8  8  8  8 10  7 10 10 10 11  8 10  9 13  9 10  8
 6 10  9 10  8  7 10  9  9 11 10 10 12 16 13 10  8  7  8  6  6 12 10 10 10  9  8 10  8 14  9 10  8
 5 10 10  9  9  8 11 10 10 11 10 10 10 13 15 10  8  7  8  5  6  7 10 10 10 10  7 10  6 13  8  9  8
 5  8  9  8  9  7  8  7  8  9  8  8  8 10 10 16 12 14 12 10  8  6 10 10 10  8 11 10  8 10  8  8 11
 8  9 10  8  9  7  8  8  8  8  8  8  8  8  8 12 15 12 14 11  9  5 10 10 10  8 13 10  9  9  9  8 10
 4  7  8  7  8  6  7  6  7  8  6  8  8  7  7 14 12 16 12 12  9  8 10 10 10  7 13 10  9  8  8  7  9
 8  9 10  9 10  9  8  8  8  8  8  8  8  8  8 12 14 12 14  9  8  4 10 10 10  8 13 10  8  9  9  9 10
 6  7  7  5  6  5  6  4  5  5  5  5  8  6  5 10 11 12  9 19 17 10 10 10 10  5 14 10 18  7 10  5  8
10  7  7  5  7  5  8  6  6  6  7  6 10  6  6  8  9  9  8 17 20 10 10 10 10  6 15 10 16  7 11  5  9
 2  8  5  4  4  3  6  3  3  5  4  4  7 12  7  6  5  8  4 10 10 27 10 10 10  3 17 10 16  8  8  4  4
10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 19 10 10 10
10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 19 10 10 10
10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 19 10 10 10
 5 10 10  9 10 11 12 14 14 12 13 13 11  9 10  8  8  7  8  5  6  3 10 10 10 14 10 10  6 19  9  9  7
 8  8  8  7  7  7  7  7  7  7  7  7  8  8  7 11 13 13 13 14 15 17 10 10 10 10 14 10 15  8 10  7 10
10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 19 10 10 10
 6  7  7  5  6  5  7  5  5  6  6  5  9  8  6  8  9  9  8 18 16 16 10 10 10  6 15 10 16  8 10  5  7
 6 10  9 10  9  8 11 10 10 12 10 11 13 14 13 10  9  8  9  7  7  8 19 19 19 19  8 19  8 15  9 10  8
 9 10 10  9  9  8  9  8  8  8  8  9  9  9  8  8  9  8  9 10 11  8 10 10 10  9 10 10 10  9 14  9  9
 7 11 10 16 11  9  9  9  9 10  9 10 10 10  9  8  8  7  9  5  5  4 10 10 10  9  7 10  5 10  9 16  8
13  9  9  8  9  7  7  6  7  8  7  7  8  8  8 11 10  9 10  8  9  4 10 10 10  7 10 10  7  8  9  8 13