|
1 |
| -**Name**,`ivadomed <https://github.com/ivadomed/ivadomed>`_,`monai <https://github.com/Project-MONAI/MONAI>`_,`delira <https://github.com/justusschock/delira>`_,`MIC-DKFZ <https://github.com/MIC-DKFZ/medicaldetectiontoolkit>`_,`ANTsPyNet <https://github.com/ANTsX/ANTsPyNet>`_,`DLTK <https://github.com/DLTK/DLTK>`_,`MIScnn <https://github.com/frankkramer-lab/MIScnn>`_,`niftytorch <https://niftytorch.github.io/doc/>`_,`DeepNeuro <https://github.com/QTIM-Lab/DeepNeuro>`_ |
2 |
| -**BIDS (1)**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|yes|,|no| |
3 |
| -**DL base library**,PyTorch,PyTorch,"PyTorch, TF",PyTorch,TF/Keras,TF,TF/Keras,PyTorch,TF/Keras |
4 |
| -**Task (2)**,"Class, |
5 |
| -Seg, Detect","Seg, Class","Class, Gen, Seg",Detect,"Class, |
6 |
| -Seg, |
7 |
| -Clust, |
8 |
| -Reg","Class, |
9 |
| -Seg, |
10 |
| -Reg",Seg,"Class, |
11 |
| -Seg",Seg |
12 |
| -**Data dimension**,"2D, 3D","2D, 3D","2D, 3D","2D, 3D","2D, 3D",3D,"2D, 3D",3D,"2D, 3D" |
13 |
| -**Multichannel**,|yes| ,|yes| ,|no| ,|no| ,|no| ,|no| ,|no| ,|no| ,|no| |
14 |
| -**Multilabel**,|yes| ," |
15 |
| - |
16 |
| - |
17 |
| -|yes| |
18 |
| -",|no| ,|no| ,|yes| ,|yes| ,|yes| ,|no| ,|no| |
19 |
| -**Uncertainty**,|yes|,|no| ,|no|,|no|,|no|,|no| ,|no| ,|no| ,|no| |
20 |
| -**Transfer Learning**,|yes|,|no|,|yes|,|no|,|no|,|yes|,|no|,|no|,|no| |
21 |
| -**Pre-processing tools**,|yes|,|yes|,|no|,|no|,|no|,|no|,|yes|,|no|,|yes| |
22 |
| -**Post-processing tools**,|yes|,|no|,|no|,|no|,|no|,|no|,|yes|,|no|,|yes| |
23 |
| -**User case examples**,|yes|,|yes|,|yes|,|no|,|yes| ,|yes|,|no|,|yes|,|yes| |
24 |
| -**Multi-GPU data parallelism**,|no|,|yes|,|yes|,|no|,|no|,|no|,|yes|,|yes|,|no| |
25 |
| -**Model evaluation**,|yes|,|yes|,|no|,|yes|,|no|,|no|,|yes|,|no|,|no| |
26 |
| -**Input region of interest**,|yes| ,|yes| ,|no|,|yes|,|no|,|no|,|no|,|yes|,|no| |
27 |
| -**Missing modality**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|no|,|no| |
28 |
| -**Models comparison**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|no|,|no| |
29 |
| -**Hyperparam optimisation**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|yes|,|no| |
30 |
| -**Multi-center models**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|no|,|yes| |
| 1 | +**Name**,`ivadomed <https://github.com/ivadomed/ivadomed>`_,`monai <https://github.com/Project-MONAI/MONAI>`_,`delira <https://github.com/justusschock/delira>`_,`MIC-DKFZ <https://github.com/MIC-DKFZ/medicaldetectiontoolkit>`_,`ANTsPyNet <https://github.com/ANTsX/ANTsPyNet>`_,`DLTK <https://github.com/DLTK/DLTK>`_,`MIScnn <https://github.com/frankkramer-lab/MIScnn>`_,`niftytorch <https://niftytorch.github.io/doc/>`_,`DeepNeuro <https://github.com/QTIM-Lab/DeepNeuro>`_,`DeepReg <https://github.com/DeepRegNet/DeepReg>`_ |
| 2 | +**BIDS (1)**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|yes|,|no|,|no| |
| 3 | +**DL base library**,PyTorch,PyTorch,"PyTorch, TF",PyTorch,TF/Keras,TF,TF/Keras,PyTorch,TF/Keras,TF |
| 4 | +**Task (2)**,"Class, Seg, Detect","Seg, Class","Class, Gen, Seg",Detect,"Class, Seg, Clust, Reg","Class, Seg, Reg",Seg,"Class, Seg",Seg,Reg |
| 5 | +**Data dimension**,"2D, 3D","2D, 3D","2D, 3D","2D, 3D","2D, 3D",3D,"2D, 3D",3D,"2D, 3D","2D, 3D" |
| 6 | +**Multichannel**,|yes| ,|yes| ,|no| ,|no| ,|no| ,|no| ,|no| ,|no| ,|no|, |yes| |
| 7 | +**Multilabel**,|yes| ,|yes| ,|no| ,|no| ,|yes| ,|yes| ,|yes| ,|no| ,|no| ,|yes| |
| 8 | +**Uncertainty**,|yes|,|no| ,|no|,|no|,|no|,|no| ,|no| ,|no| ,|no| ,|no| |
| 9 | +**Transfer Learning**,|yes|,|no|,|yes|,|no|,|no|,|yes|,|no|,|no|,|no|,|no| |
| 10 | +**Pre-processing tools**,|yes|,|yes|,|no|,|no|,|no|,|no|,|yes|,|no|,|yes|,|yes| |
| 11 | +**Post-processing tools**,|yes|,|no|,|no|,|no|,|no|,|no|,|yes|,|no|,|yes|,|yes| |
| 12 | +**User case examples**,|yes|,|yes|,|yes|,|no|,|yes| ,|yes|,|no|,|yes|,|yes|,|yes| |
| 13 | +**Multi-GPU data parallelism**,|no|,|yes|,|yes|,|no|,|no|,|no|,|yes|,|yes|,|no|,|no| |
| 14 | +**Model evaluation**,|yes|,|yes|,|no|,|yes|,|no|,|no|,|yes|,|no|,|no|,|yes| |
| 15 | +**Input region of interest**,|yes| ,|yes| ,|no|,|yes|,|no|,|no|,|no|,|yes|,|no|,|yes| |
| 16 | +**Missing modality**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|no|,|no|,|yes| |
| 17 | +**Models comparison**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|no|,|no|,|yes| |
| 18 | +**Hyperparam optimisation**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|yes|,|no|,|yes| |
| 19 | +**Multi-center models**,|yes|,|no|,|no|,|no|,|no|,|no|,|no|,|no|,|yes|,|no| |
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