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Commits on Nov 30, 2022

• fixed a wrong comment. Resolves lh3#997

  lh3

  committed
  226fd61

Commits on Nov 2, 2022

• r1152: evaluate base Sn and Sp

  lh3

  committed
  822ccd1

• r1151: added exoneval

  lh3

  committed
  f67849c

Commits on Oct 22, 2022

• r1150: the prev impl counted one less submer

  lh3

  committed
  b0b199f

Commits on Oct 21, 2022

• r1149: implemented random open syncmer

  Show description for c2f07ff
  lh3

  committed
  c2f07ff

• removed -b0 (a typo)

  lh3

  committed
  cefd0d9

Commits on Oct 7, 2022

• support ##PAF lines in GFF3

  lh3

  committed
  2a319c8

Commits on Sep 21, 2022

• extract junctions from GFF

  lh3

  committed
  5aa4355

Commits on Sep 11, 2022

• junceval for plain junction BED as input

  lh3

  committed
  6ed7263

Commits on Sep 10, 2022

• skip unmapped lines

  lh3

  committed
  315795e

Commits on Sep 9, 2022

• r1141: junceval to support miniprot output

  lh3

  committed
  fc6869a

• sync with tag changes in miniprot

  lh3

  committed
  6252e5e

• output CDS and stop_codon

  lh3

  committed
  843729d

• output dist from end instead

  lh3

  committed
  195c98f

• output more info

  lh3

  committed
  a2e6659

• added paf2gff

  lh3

  committed
  e450f16

Commits on Jul 19, 2022

• added longcs2fa

  lh3

  committed
  15cade0

Commits on Jun 13, 2022

• clarify multi-part index in option -I (lh3#301)

  lh3

  committed
  767556b

Commits on May 14, 2022

• option to keep Ensembl_canonical only

  lh3

  committed
  50a26a6

Commits on May 12, 2022

• r1132: document misjoin output

  Show description for 31de4fd
  lh3

  committed
  31de4fd

Commits on Mar 1, 2022

• added the second minimap2 paper

  lh3

  committed
  e018cae

• removed travis CI

  lh3

  committed
  7c02742

• Fix indentation

  

  cjw85

  authored and

  lh3

  committed
  a41f5d1

• fix undefined variable

  

  cjw85

  authored and

  lh3

  committed
  ed3d0eb

• Build mappy via Makefile and libminimap2.a

  

  cjw85

  authored and

  lh3

  committed
  e6d166a

Commits on Dec 26, 2021

• typo on simde

  lh3

  committed
  06fedaa

• Release minimap2-2.24 (r1122)

  lh3

  committed
  fe35e67

• r1121: change bw_long to bw if bw is longer

  Show description for e25aa5e
  lh3

  committed
  e25aa5e

• r1121: updated obsolete settings in manpage

  Show description for 3bde345
  lh3

  committed
  3bde345

Commits on Dec 25, 2021

• r1119: fixed a typo in the new chaining code

  Show description for 36942ff
  lh3

  committed
  36942ff

Commits on Dec 24, 2021

• r1118: use -r1k,100k for asm* modes

  lh3

  committed
  d3a89d3

Commits on Nov 24, 2021

• r1117: added --no-hash-name for deterministic

  lh3

  committed
  c8f0a35

Commits on Nov 21, 2021

• r1116: cut long chains at weak points

  lh3

  committed
  fcaadc2

Commits on Nov 20, 2021

• r1115: prepare for chain breaking

  lh3

  committed
  db37fc4

Commits on Nov 19, 2021

• r1114: retain more candidate inversion alignments

  lh3

  committed
  a8f1fa8

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