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Commits on Nov 30, 2018

• change image tag from template to v1.0 in view of coming release

  ottojolanki

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  3c6558e

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• remove never used aligner defaults from docker.json on workflow_opts

  ottojolanki

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• Merge pull request ENCODE-DCC#12 from ENCODE-DCC/PIP-434_globalize

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  ottojolanki

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• Fixed some small documentation issues

  strattan

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Commits on Nov 29, 2018

• make disk size definitions per task, give mad qc and rna qc 2 cores each

  ottojolanki

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• docs updated with workflow level variables

  ottojolanki

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• rest of the variables, and some additional grouping

  ottojolanki

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• bam to signals and rsem

  ottojolanki

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• kallisto globalized

  ottojolanki

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Commits on Nov 27, 2018

• extend timeout for tests

  ottojolanki

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• Merge pull request ENCODE-DCC#11 from ENCODE-DCC/PIP-427_final_tweaks

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  ottojolanki

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Commits on Nov 26, 2018

• fix documentation, change rna_qc result globbing to be more specific

  ottojolanki

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• Merge pull request ENCODE-DCC#10 from ENCODE-DCC/PIP-424_bam_to_signal_memory

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  ottojolanki

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• no need to raise exception again, just log and exit with signal 1

  ottojolanki

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Commits on Nov 20, 2018

• exit with 1 after raising Assertion error

  ottojolanki

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• check star return code and assert that it is 0

  ottojolanki

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Commits on Nov 1, 2018

• Merge pull request ENCODE-DCC#9 from ENCODE-DCC/PIP-371_markdown

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  ottojolanki

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• Fixed some small documentation issues

  strattan

  committed
  04bd4b6

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Commits on Oct 31, 2018

• Make DNAnexus spelling consistent

  strattan

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• make output filename definitions match with the actual description in the .wdl

  ottojolanki

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• slurm information added

  ottojolanki

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• clean per task wdl

  ottojolanki

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• remove tutorials, add FAQ

  ottojolanki

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• output description

  ottojolanki

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  b8d077c

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• software information added

  ottojolanki

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• installation and howto

  ottojolanki

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• badge, finally

  ottojolanki

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• doc templates

  ottojolanki

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• Merge pull request ENCODE-DCC#8 from ENCODE-DCC/PIP-407_rna_qc_outnames

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  ottojolanki

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• modify output and test

  ottojolanki

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Commits on Oct 30, 2018

• Merge pull request ENCODE-DCC#7 from ENCODE-DCC/PIP-405_bam_to_signal_resources

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  ottojolanki

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• changed the signal track generation input parameters into individual ones

  ottojolanki

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• Merge pull request ENCODE-DCC#6 from ENCODE-DCC/PIP-403_log_trid_notfound

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  ottojolanki

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Commits on Oct 29, 2018

• update md5s for qc metrics that now contain the transcript_id_not_found count

  ottojolanki

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• add transcript_id_not_found counting

  ottojolanki

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