CITATION.cff

cff-version: 1.2.0
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title: chewBBACA
abstract: chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to analyse and validate typing schemas and allele calling results.
authors:
  - family-names: Mamede
    given-names: Rafael
  - family-names: Vila-Cerqueira
    given-names: Pedro
  - family-names: Silva
    given-names: Mickael
  - family-names: Carriço
    given-names: João
  - family-names: Ramirez
    given-names: Mário
version: 3.3.8
date-released: "2023-06-29"
keywords:
  - bioinformatics
  - genomics 
  - mlst
  - cgmlst
  - wgmlst
  - outbreak detection
  - bacterial genome analysis
  - bacterial strains
  - allele calling
license: GPL-3.0
doi: 10.1099/mgen.0.000166
repository-code: "https://github.com/B-UMMI/chewBBACA" 
contact:
  - email: imm-bioinfo@medicina.ulisboa.pt
    name: "Molecular Microbiology and Infection Unit (UMMI), Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa"