diff --git a/Singularity b/Singularity index 30a7c2a..7287785 100644 --- a/Singularity +++ b/Singularity @@ -21,6 +21,7 @@ From: centos:latest # Executables must be exported for nextflow, if you use their singularity native integration. # It would be cool to use $SCIF_APPBIN_bwa variable, but it must be set after PATH variable, because I tried to use it here and in %environment without success. echo "PlasmidID Done" + echo "export LC_ALL=en_US.UTF-8" >> $SINGULARITY_ENVIRONMENT find /scif/apps -maxdepth 2 -name "bin" | while read in; do echo "export PATH=\${PATH}:$in" >> $SINGULARITY_ENVIRONMENT;done