LeadField-Pipeline

Scripted from the brainstorm toolbox ver. Feb. 24 2019 and OpenMEEG-2.4.9999-Win64.tar.gz

1. Download the Brainstorm ver. Feb. 24 2019.rar from the link below and unzip outside of 'example data' folder

2. Download the example data from https://lstneuro-my.sharepoint.com/:f:/g/personal/andy_neuroinformatics-collaboratory_org/EjIH-Do76hZKtvPGRuOfAP8BfXCz7ysQWEbjB1E5_g95bw?e=B7I8np

   Example data includes:

                  1) 113922_MEG_anatomy 
                  2) 113922_MEG_Restin_unproc 
                  3) MC0000010_EEG_anatomy_t13d_anatVOL_20060115002658_2.nii_out 
                  4) MC0000010_EEG_data.mat
                  5) Brainstorm ver. Feb. 24 2019.rar
   

3. Set the database folder as the Brainstorm_db if it is the first time to run brainstorm on your PC

4. Run scripted_fs_lf_ppl.m for Freesurfer anatomy files

5. Run scripted_hcp_lf_ppl.m for HCP (Human Connectome Project) anatomy files

6. You will see Gain.mat and patch.mat when the calculation is finished.

Note

1. openmeeg ask for Microsoft Visual C++ 2010 Redistributable Package (x64), it can't be install sometimes. Please copy vcomp100.dll to C:\Users<UsersName>.brainstorm\openmeeg\win64
2. example leadfield results: https://lstneuro-my.sharepoint.com/:f:/g/personal/rigel_wang_neuroinformatics-collaboratory_org/EoIaU5La9yJPjdFABQk6_C4B50Z-KPWZJ6KRmN25F3N8nQ?e=dmvV4g

When you use this pipeline, please cite: Hu, Shiang & Pedro A. Valdes-Sosa, et al. 2019. “The Statistics of EEG Unipolar References: Derivations and Properties.” Brain Topography, April. https://doi.org/10.1007/s10548-019-00706-y

Flow: