.pre-commit-config.yaml

repos:
#####
# Basic file cleanliness
-   repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.6.0
    hooks:
    -   id: check-added-large-files
    -   id: check-yaml
    -   id: check-toml
    -   id: end-of-file-fixer
    -   id: mixed-line-ending
    -   id: trailing-whitespace
#####
# Python
-   repo: https://github.com/psf/black
    rev: 24.4.2
    hooks:
        # if you have ipython notebooks, consider using
        # `black-jupyter` hook instead
    -   id: black
        args: ['--line-length', '79']
-   repo: https://github.com/PyCQA/isort
    rev: 5.13.2
    hooks:
    -   id: isort
        args: ['--profile', 'black',
               '--line-length', '79']
- repo: https://github.com/astral-sh/ruff-pre-commit
  rev: v0.5.0
  hooks:
    - id: ruff
#####
# R
-   repo: https://github.com/lorenzwalthert/precommit
    rev: v0.4.2
    hooks:
    -   id: style-files
        args: [--style_pkg=styler, --style_fun=tidyverse_style,
               --cache-root=styler-perm]
    -   id: use-tidy-description
    -   id: lintr
    -   id: readme-rmd-rendered
    -   id: parsable-R
    -   id: no-browser-statement
    -   id: no-print-statement
    -   id: no-debug-statement
    -   id: deps-in-desc
        exclude: data-raw
#####
# Java
- repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
  rev: v2.13.0
  hooks:
  - id: pretty-format-java
    args: [--aosp,--autofix]
#####
# Julia
# Due to lack of first-class Julia support, this needs Julia local install
#   and JuliaFormatter.jl installed in the library
# - repo: https://github.com/domluna/JuliaFormatter.jl
#   rev: v1.0.39
#   hooks:
#   - id: julia-formatter
#####
# Secrets
-   repo: https://github.com/Yelp/detect-secrets
    rev: v1.5.0
    hooks:
    -   id: detect-secrets
        args: ['--baseline', '.secrets.baseline']
        exclude: package.lock.json