From fb25a43f026b82ff5ede72f31c979aea7dc9bce9 Mon Sep 17 00:00:00 2001 From: Peter van Heusden Date: Mon, 25 Jul 2022 12:21:38 +0200 Subject: [PATCH] Add page on workbench, add workbench publicaton to publications --- index.html | 2 +- publications.html | 11 ++ workbench.html | 276 ++++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 288 insertions(+), 1 deletion(-) create mode 100644 workbench.html diff --git a/index.html b/index.html index 8c65847..9680fd7 100644 --- a/index.html +++ b/index.html @@ -179,7 +179,7 @@

combatTB-NeoDB

combatTB Workbench

A customizable platform for variant discovery and annotation and phylogeny construction.

- Read more + Read more diff --git a/publications.html b/publications.html index 2502952..f798a1a 100644 --- a/publications.html +++ b/publications.html @@ -139,6 +139,17 @@

Publications

+ + The COMBAT-TB Workbench: Making Powerful Mycobacterium tuberculosis Bioinformatics Accessible + van Heusden, P. et al. + Feb 2022 + mSphere + + 10.1128/msphere.00991-21 + + + COMBAT-TB-NeoDB: fostering tuberculosis research through integrative analysis using graph database technologies diff --git a/workbench.html b/workbench.html new file mode 100644 index 0000000..4d3871c --- /dev/null +++ b/workbench.html @@ -0,0 +1,276 @@ + + + + + + + + + + COMBAT-TB + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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combatTB and combat-SARS-Cov-2 Workbench

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The combatTB project has produced two Workbench platforms, for analysis of M. tuberculosis (Mtb) + and SARS-CoV-2 sequence data. The first of these, for analysis Mtb data, is described in this + publication in mSphere. Code + for deploying the combatTB Workbench can be found + here. +

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The work on the combatTB Workbench led to the development of a similar Workbench for SARS-CoV-2. + The code for deploying the "combat-SARS-Cov-2 Workbench" can be found + here. Funding from the + Africa CDC Institute for Pathogen Genomics (IPG) + allowed us to deploy an instance of the Workbench at + workbench.sanbi.ac.za for use by labs + supported by the IPG's Pathogen Genomics Initiative. +

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