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species_associations_test.csv
1 | org_list | pval | betaestimate | stderror | padj | 2.5% | 97.5% |
|---|---|---|---|---|---|---|---|
2 | Acidaminococcus_unclassified | 0.72757837951234 | 0.115083416748589 | 0.330185873028903 | 0.764324762315994 | -0.532069002591975 | 0.762235836089153 |
3 | Adlercreutzia_equolifaciens | 0.41080686607563 | -3.55284357158829 | 4.31612953396776 | 0.491079472090408 | -12.0123020107747 | 4.9066148675982 |
4 | Akkermansia_muciniphila | 0.095460184724142 | 0.384420599436187 | 0.230138776687266 | 0.156567784700955 | -0.0666431143169607 | 0.835484313189326 |
5 | Alistipes_finegoldii | 0.027043469665965 | 3.46869515501247 | 1.56435897972999 | 0.0562504169052072 | 0.402607895849872 | 6.53478241417511 |
6 | Alistipes_indistinctus | 0.000588575487078765 | 3.63242472422848 | 1.0502400240495 | 0.00218613752343541 | 1.57399210196901 | 5.69085734648799 |
7 | Alistipes_onderdonkii | 0.000421656793444164 | 0.649584750021257 | 0.183000072489164 | 0.00175409502348922 | 0.290911198774276 | 1.00825830126824 |
8 | Alistipes_putredinis | 0.230527355462152 | 0.172657419753178 | 0.143827912382927 | 0.319664599574184 | -0.109240108488941 | 0.454554947995297 |
9 | Alistipes_senegalensis | 2.37238650675709e-05 | 18.4371015192955 | 4.32161779945958 | 0.000154205122939211 | 9.96688627740724 | 26.9073167611833 |
10 | Alistipes_shahii | 5.04905992312068e-08 | 1.52208857221197 | 0.275085149992237 | 1.31275558001138e-06 | 0.982931585545387 | 2.06124555887854 |
11 | Alistipes_unclassified | 1.2832585872007e-05 | 2.34332363956961 | 0.531797554275656 | 9.53277807634803e-05 | 1.30101958612282 | 3.38562769301637 |
12 | Bacteroidales_bacterium_ph8 | 2.67710576127984e-05 | 1.47164075881339 | 0.347230304479726 | 0.000163775881866531 | 0.791081867692258 | 2.15219964993454 |
13 | Bacteroides_caccae | 0.00356834879158479 | 0.71574426892648 | 0.244473829890421 | 0.0103085631756894 | 0.236584367178681 | 1.19490417067427 |
14 | Bacteroides_cellulosilyticus | 0.0510596272801014 | 0.738245994699968 | 0.377501091520473 | 0.0984437792760143 | -0.00164254880472041 | 1.47813453820465 |
15 | Bacteroides_clarus | 0.0125225098417975 | 1.39216152986536 | 0.555529884168412 | 0.0282220850157535 | 0.303342964559578 | 2.48098009517117 |
16 | Bacteroides_coprocola | 0.000403068653483139 | -0.766774145868304 | 0.21527763073035 | 0.00175409502348922 | -1.18871054877692 | -0.344837742959711 |
17 | Bacteroides_dorei | 3.11608222423002e-07 | 0.686282972007137 | 0.132342624725408 | 5.40120918866536e-06 | 0.426896193925836 | 0.945669750088431 |
18 | Bacteroides_eggerthii | 0.251394756542437 | 0.193623752542447 | 0.168620777066978 | 0.339546164680694 | -0.136866897553987 | 0.524114402638878 |
19 | Bacteroides_finegoldii | 0.723583515119107 | 0.207778503865224 | 0.587160757754309 | 0.764324762315994 | -0.943035434468471 | 1.35859244219891 |
20 | Bacteroides_fragilis | 0.0888873473534439 | 0.231921845219888 | 0.136058879709124 | 0.154071402079303 | -0.0347486587868651 | 0.498592349226635 |
21 | Bacteroides_intestinalis | 0.337672446010826 | -1.00921901787255 | 1.05161756945857 | 0.428267492501536 | -3.07035157952091 | 1.05191354377581 |
22 | Bacteroides_massiliensis | 0.0843827983121393 | -0.337038566359286 | 0.194910612361269 | 0.148742559736652 | -0.719056346792018 | 0.0449792140734506 |
23 | Bacteroides_nordii | 0.218803074373698 | -8.88849416456916 | 7.21912661590777 | 0.307507023444116 | -23.0377223315831 | 5.26073400244459 |
24 | Bacteroides_ovatus | 0.0119035912066 | 0.322402146311148 | 0.127729301487266 | 0.0281357610337818 | 0.0720573156256476 | 0.572746976996654 |
25 | Bacteroides_plebeius | 0.000504194474664093 | -0.557015542106754 | 0.159096413865044 | 0.00201677789865637 | -0.868838783351714 | -0.245192300861785 |
26 | Bacteroides_salyersiae | 0.55854863243021 | 0.556703891774945 | 0.951003032990898 | 0.643827284294445 | -1.30722780207557 | 2.42063558562546 |
27 | Bacteroides_stercoris | 0.0113045628555244 | -0.256291716531255 | 0.100805541757946 | 0.0273412683017334 | -0.453866947818875 | -0.0587164852436349 |
28 | Bacteroides_thetaiotaomicron | 0.354311755931561 | 0.190953373647227 | 0.205966771718609 | 0.442052122473742 | -0.212734080933233 | 0.594640828227687 |
29 | Bacteroides_uniformis | 0.358899971442331 | 0.129905029222128 | 0.141462957907226 | 0.442052122473742 | -0.147357273422541 | 0.407167331866796 |
30 | Bacteroides_vulgatus | 0.926469438246465 | -0.0144557878937808 | 0.156560369493847 | 0.935464287161479 | -0.321308473508005 | 0.292396897720441 |
31 | Bacteroides_xylanisolvens | 0.000395661711188792 | 2.24316685164558 | 0.628905242796766 | 0.00175409502348922 | 1.01053522607551 | 3.47579847721565 |
32 | Barnesiella_intestinihominis | 0.0232646290389287 | 1.3666265703629 | 0.60046149390602 | 0.0493779881642568 | 0.18974366820398 | 2.5435094725218 |
33 | Bifidobacterium_adolescentis | 0.866395699231912 | -0.0209762570276591 | 0.124618506339036 | 0.883383850197244 | -0.265224041259345 | 0.223271527204029 |
34 | Bifidobacterium_bifidum | 0.2341900236396 | -0.494935155015823 | 0.415544138724222 | 0.320470558664716 | -1.30938670090201 | 0.319516390870378 |
35 | Bifidobacterium_longum | 0.285020040614504 | -0.344785480329119 | 0.322156834758072 | 0.375216255998841 | -0.976201273828363 | 0.286630313170118 |
36 | Bifidobacterium_pseudocatenulatum | 0.000400127643210721 | -1.71158925895426 | 0.480275929249547 | 0.00175409502348922 | -2.6529127829249 | -0.770265734983641 |
37 | Bilophila_unclassified | 1.71985461033456e-05 | -6.8182436708093 | 1.5709883205336 | 0.000119243252983196 | -9.89732419918824 | -3.7391631424304 |
38 | Clostridium_asparagiforme | 0.0925647697280328 | 4.25182405903849 | 2.52303383850238 | 0.15526993631799 | -0.693231396202023 | 9.19687951427899 |
39 | Clostridium_bolteae | 0.215789436267383 | 1.99952778390937 | 1.61336861538259 | 0.307426046189149 | -1.16261659602779 | 5.16167216384649 |
40 | Clostridium_hathewayi | 0.166554950468264 | 3.45042596389923 | 2.49065470886652 | 0.243967814770416 | -1.43116756340424 | 8.33201949120271 |
41 | Clostridium_leptum | 0.163630229650888 | -4.80325224184749 | 3.44322094897461 | 0.243107769767034 | -11.5518412926515 | 1.94533680895658 |
42 | Clostridium_nexile | 0.0520616140401999 | -1.26440916023464 | 0.649344897017902 | 0.0984437792760143 | -2.5371017719346 | 0.00828345146531899 |
43 | Collinsella_aerofaciens | 0.012754211497504 | -1.58165101750237 | 0.632803383532216 | 0.0282220850157535 | -2.82192285852061 | -0.341379176484134 |
44 | Coprobacillus_unclassified | 0.0519950403837306 | -9.4940100795851 | 4.8743183278218 | 0.0984437792760143 | -19.0474984512994 | 0.0594782921290787 |
45 | Coprobacter_fastidiosus | 0.154562683858406 | 5.48248986405039 | 3.84540081951248 | 0.232964045235858 | -2.05435724831489 | 13.0193369764154 |
46 | Coprococcus_catus | 5.19144017845683e-05 | -23.3656689853684 | 5.72438648427709 | 0.000284163041347111 | -34.5852603281393 | -12.1460776425973 |
47 | Coprococcus_comes | 2.62693689357536e-09 | -10.7497537455404 | 1.77329829907097 | 9.10671456439459e-08 | -14.2253545455656 | -7.27415294551517 |
48 | Desulfovibrio_piger | 0.963307468933584 | -0.25599988512961 | 5.56204368965211 | 0.963307468933584 | -11.1574051972859 | 10.6454054270267 |
49 | Dorea_formicigenerans | 1.22790207884775e-07 | -13.6445749127404 | 2.54287249494382 | 2.55403632400331e-06 | -18.6285134201077 | -8.66063640537294 |
50 | Dorea_longicatena | 1.51527293289054e-06 | -5.33037155721353 | 1.09520052912451 | 1.9698548127577e-05 | -7.47692515014681 | -3.1838179642803 |
51 | Eggerthella_unclassified | 0.260243649301592 | -2.13127633450734 | 1.8909790160774 | 0.346991532402122 | -5.83752710154007 | 1.57497443252536 |
52 | Enterobacter_cloacae | 0.361292600098732 | 0.869588599016576 | 0.951690083479085 | 0.442052122473742 | -0.995689689046341 | 2.73486688707947 |
53 | Escherichia_coli | 0.0142065176674136 | 0.268622542697444 | 0.109173745790522 | 0.030780788279396 | 0.0546459328906894 | 0.482599152504201 |
54 | Escherichia_unclassified | 2.88648685027168e-06 | 1.03303050843721 | 0.218304086789717 | 2.72904211298413e-05 | 0.605162360651459 | 1.46089865622296 |
55 | Eubacterium_biforme | 0.62868613848819 | 0.674967577340645 | 1.39493204819288 | 0.688245877923914 | -2.05904899799804 | 3.40898415267939 |
56 | Eubacterium_eligens | 0.0053325749711755 | -1.42751771437572 | 0.51013502522031 | 0.0149888593784392 | -2.42736399105995 | -0.427671437691475 |
57 | Eubacterium_hallii | 1.95220850554497e-06 | -6.9798889138701 | 1.44980953691128 | 2.2558853841853e-05 | -9.82146339065892 | -4.1383144370813 |
58 | Eubacterium_rectale | 4.42607059105823e-06 | -0.720025059811175 | 0.155153161602056 | 3.54085647284658e-05 | -1.02411966863872 | -0.415930450983619 |
59 | Eubacterium_siraeum | 0.0820284955396495 | -0.773498443585955 | 0.443903245719458 | 0.147085578209027 | -1.64353281781651 | 0.0965359306446274 |
60 | Eubacterium_ventriosum | 4.30809441878551e-06 | -5.94630054787207 | 1.27972258574326 | 3.54085647284658e-05 | -8.45451072613136 | -3.43809036961281 |
61 | Faecalibacterium_prausnitzii | 2.75411225640787e-12 | -1.0007624244187 | 0.139669332545171 | 2.86427674666419e-10 | -1.27450928595198 | -0.727015562885417 |
62 | Flavonifractor_plautii | 0.0963494059698182 | -5.44866007577549 | 3.27068467159289 | 0.156567784700955 | -11.8590842368847 | 0.961764085333814 |
63 | Haemophilus_parainfluenzae | 0.10369091991548 | -1.42217432596382 | 0.872419458280875 | 0.165905471864768 | -3.1320850436063 | 0.28773639167863 |
64 | Klebsiella_pneumoniae | 0.00332578407391261 | 1.11096499902983 | 0.376612335314665 | 0.00988232981962605 | 0.372818385679564 | 1.8491116123801 |
65 | Lachnospiraceae_bacterium_1_1_57FAA | 4.95129050670726e-07 | -4.91550327535447 | 0.964941199005116 | 7.35620303853649e-06 | -6.80675327260337 | -3.02425327810553 |
66 | Lachnospiraceae_bacterium_3_1_46FAA | 0.106669048014928 | -7.94242365176167 | 4.9142007660698 | 0.168084560508372 | -17.5740801660576 | 1.68923286253425 |
67 | Lachnospiraceae_bacterium_5_1_63FAA | 0.000421657457569524 | -6.8073581949311 | 1.91775929510044 | 0.00175409502348922 | -10.5660973443447 | -3.04861904551722 |
68 | Lachnospiraceae_bacterium_8_1_57FAA | 0.563348873757639 | -2.13750703002288 | 3.69647965504435 | 0.643827284294445 | -9.38247402349482 | 5.107459963449 |
69 | Megamonas_funiformis | 0.0010208176883989 | -9.93151453807724 | 3.00597734893922 | 0.00366086343425812 | -15.8231218803413 | -4.03990719581312 |
70 | Megamonas_hypermegale | 0.0024522886003696 | -2.41474844156305 | 0.793167490899779 | 0.00750111807171879 | -3.96932815743461 | -0.860168725691488 |
71 | Megamonas_rupellensis | 0.540161324049663 | -0.717268980189259 | 1.1701254279501 | 0.631199749451291 | -3.01067267636601 | 1.57613471598746 |
72 | Megamonas_unclassified | 0.00208226667300011 | -1.07045888850982 | 0.345954715444134 | 0.00656229496945489 | -1.74851767106213 | -0.392400105957518 |
73 | Megasphaera_unclassified | 0.129515385220941 | -0.336540718155439 | 0.221629211733111 | 0.198082353867321 | -0.770925991074344 | 0.097844554763461 |
74 | Odoribacter_splanchnicus | 0.29819592838726 | -1.10535028632331 | 1.06142921744385 | 0.387654706903438 | -3.18571332465179 | 0.975012752005199 |
75 | Oscillibacter_unclassified | 0.624366060892524 | -0.507017095053285 | 1.03478909424638 | 0.688245877923914 | -2.53516645137101 | 1.52113226126444 |
76 | Parabacteroides_distasonis | 0.00681114505239568 | 0.90416810427302 | 0.332771211470661 | 0.0186410285644513 | 0.251948514698764 | 1.55638769384728 |
77 | Parabacteroides_goldsteinii | 0.0110892575189981 | 4.57642846058335 | 1.79521461856251 | 0.0273412683017334 | 1.05787246368107 | 8.09498445748567 |
78 | Parabacteroides_johnsonii | 0.676037175688684 | -0.635159321520713 | 1.51908757502376 | 0.732373606996075 | -3.61251625792958 | 2.34219761488814 |
79 | Parabacteroides_merdae | 0.0511274063255443 | 0.949675336768374 | 0.485757512013264 | 0.0984437792760143 | -0.00239189199739683 | 1.90174256553416 |
80 | Parabacteroides_unclassified | 0.116630253337503 | 0.421186552404618 | 0.267971441331328 | 0.181038005180601 | -0.104027821490081 | 0.946400926299317 |
81 | Paraprevotella_clara | 0.00814123193426686 | -8.51246829198126 | 3.20422858824689 | 0.0211672030290938 | -14.7926409231788 | -2.23229566078377 |
82 | Paraprevotella_unclassified | 0.00948835779967696 | -3.48712319330174 | 1.33921360926977 | 0.024068029540644 | -6.1119336350764 | -0.862312751527123 |
83 | Parasutterella_excrementihominis | 7.90993179262328e-05 | -18.5324045472358 | 4.65683037177105 | 0.000411316453216411 | -27.6596243580191 | -9.40518473645211 |
84 | Peptostreptococcaceae_noname_unclassified | 0.0334125579769809 | -4.2629495020367 | 1.99866320193587 | 0.0681354123452159 | -8.1802573950565 | -0.345641609016902 |
85 | Phascolarctobacterium_succinatutens | 0.59906497097921 | -0.475497597159867 | 0.903856073547824 | 0.669922118084278 | -2.24702294852142 | 1.29602775420168 |
86 | Prevotella_copri | 0.407150234605654 | 0.0504510300963574 | 0.0608130108194396 | 0.491079472090408 | -0.0687402809011891 | 0.169642341093904 |
87 | Prevotella_stercorea | 0.768864434650574 | -0.0428235026869585 | 0.145649227408107 | 0.791701992115442 | -0.328290742782931 | 0.242643737409014 |
88 | Roseburia_hominis | 0.012377009999806 | -2.39747535906703 | 0.955097717453302 | 0.0282220850157535 | -4.26943248699194 | -0.525518231142169 |
89 | Roseburia_intestinalis | 0.00114435262126307 | -1.59612728800092 | 0.487953526099924 | 0.00383911847133416 | -2.5524986252861 | -0.639755950715748 |
90 | Roseburia_inulinivorans | 2.87094967856189e-06 | -2.22010149414132 | 0.46904725188919 | 2.72904211298413e-05 | -3.1394172148916 | -1.30078577339101 |
91 | Roseburia_unclassified | 0.688941119115383 | -1.21326213889011 | 3.02920552924207 | 0.738658519463916 | -7.1503958779741 | 4.72387160019394 |
92 | Ruminococcus_bromii | 0.000537720791742991 | -0.845099696693209 | 0.242600182616434 | 0.00207122082745448 | -1.32058731726425 | -0.369612076122159 |
93 | Ruminococcus_callidus | 0.00107617944363689 | -4.69868572245911 | 1.42870833065786 | 0.00373075540460787 | -7.49890259496087 | -1.89846884995736 |
94 | Ruminococcus_gnavus | 0.09090790728021 | -0.540821524856474 | 0.319285304802251 | 0.154990530444948 | -1.16660922306178 | 0.0849661733488332 |
95 | Ruminococcus_lactaris | 4.69407704317383e-05 | -5.78462303193727 | 1.40885935237236 | 0.000271213340272266 | -8.54593662186943 | -3.02330944200494 |
96 | Ruminococcus_obeum | 1.74809088934332e-11 | -9.31735209146499 | 1.35387034562111 | 9.09007262458525e-10 | -11.9708892086192 | -6.66381497431085 |
97 | Ruminococcus_sp_5_1_39BFAA | 0.00756446545458334 | -1.18685736860258 | 0.442581713451231 | 0.0201719078788889 | -2.05430158718302 | -0.319413150022143 |
98 | Ruminococcus_torques | 0.00123049833152164 | -1.25660258615485 | 0.386641557521348 | 0.00399911957744534 | -2.01440611382316 | -0.498799058486538 |
99 | Streptococcus_parasanguinis | 0.590466271733198 | 0.676741533830154 | 1.25670926675802 | 0.667483611524485 | -1.78636336805329 | 3.1398464357136 |
100 | Streptococcus_salivarius | 0.177625824160206 | -0.547201703842839 | 0.405341583049182 | 0.256570634898075 | -1.34165660805569 | 0.24725320037001 |
101 | Subdoligranulum_sp_4_3_54A2FAA | 0.0650852104693388 | -5.40974718450925 | 2.92626637718648 | 0.118751962961601 | -11.1451238929652 | 0.325629523946699 |
102 | Subdoligranulum_unclassified | 0.319066908397901 | -0.30605564649549 | 0.306866625753865 | 0.409666153992366 | -0.907503181030393 | 0.295391888039412 |
103 | Sutterella_wadsworthensis | 0.0617275574318214 | 0.987400886331896 | 0.527346922782325 | 0.114636892373383 | -0.0461800896794873 | 2.02098186234329 |
104 | Veillonella_parvula | 0.418524841882697 | 0.908703787794239 | 1.12235032205596 | 0.494620267679551 | -1.29106242147235 | 3.10846999706085 |
105 | Veillonella_unclassified | 0.753271860180835 | -0.222916245346536 | 0.70879915386156 | 0.783402734588068 | -1.61213705918765 | 1.16630456849456 |