_pkgdown.yml

template:
  bootstrap: 5
  bootswatch: spacelab
navbar:
  structure:
    left: [API, articles]
    right: [search, github]
  components:
    API:
      text: API
      href: reference/index.html
    github:
      icon: fa-github
      href: https://github.com/CamaraLab/ConDecon
      aria-label: GitHub
reference:
- title: "Main Functions"
  contents:
    - RunConDecon
    - PlotConDecon
    - TransferFeatures
    - BuildTrainingSet
    - Map2Latent
    - BuildModel
    - PredictCellProb
    - CalcRelativeCellProb
- title: "Example data"
  contents:
    - counts_gps
    - latent_gps
    - variable_genes_gps
    - meta_data_gps
    - bulk_gps
    - true_prop_gps
- title: "internal"
  contents:
    - BulkCells
    - BulkCells_subfxn
    - CellProb
    - CorBulk
    - Find_Sigma
    - GeneIndex
    - GeneIndex_subfxn
    - MultiVarFit
    - PickCells
    - set_zero
    - smooth_cell_prob