A simple IPython/Jupyter widget to embed an interactive 3Dmol.js viewer in a notebook.
The widget is completely static, which means the viewer doesn't need a running IPython kernel to be useful and web pages and presentations generated from the notebook will work as expected. However, this also means there is only one-way communication between the notebook and the viewer.
If you experience problems, please file an issue.
From PyPI:
pip install py3Dmol
Important: In order to use with JupyterLab you must install the JupyterLab extension:
jupyter labextension install jupyterlab_3dmol
Open a notebook
jupyter notebook
and issue
import py3Dmol
view = py3Dmol.view(query='pdb:1ubq')
view.setStyle({'cartoon':{'color':'spectrum'}})
viewThe returned view object has the exact same API as $3Dmol.GLViewer with the exception that functions return None.
MIT