From ad794ab97fccada991c2f3de94e21d3ca7976d74 Mon Sep 17 00:00:00 2001 From: Antoine de Daran <92319416+adedaran@users.noreply.github.com> Date: Fri, 2 Sep 2022 17:56:02 +0200 Subject: [PATCH] Add execute-notebooks in Makefile (#20) --- CONTRIBUTING.md | 9 + Makefile | 6 + ...menting Sliceline on Titanic dataset.ipynb | 24 + ...celine on California housing dataset.ipynb | 24 + poetry.lock | 1469 ++++++++++++++++- pyproject.toml | 3 + 6 files changed, 1491 insertions(+), 44 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 71c4827..57d4803 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -62,3 +62,12 @@ These tests absolutely have to pass. ```sh $ make test ``` + +**Notebook tests** + +You don't have to worry too much about these, as we only check them before each release. +If you break them because you changed some code, then it's probably because the notebooks have to be modified, not the other way around. + +```sh +$ make execute-notebooks +``` diff --git a/Makefile b/Makefile index 1e4a9ee..da5d0c2 100644 --- a/Makefile +++ b/Makefile @@ -8,3 +8,9 @@ test: doc: sphinx-build -a docs/source docs/build + +notebook: + poetry run jupyter notebook + +execute-notebooks: + poetry run jupyter nbconvert --execute --to notebook --inplace notebooks/*.ipynb --ExecutePreprocessor.timeout=-1 diff --git a/notebooks/1. Implementing Sliceline on Titanic dataset.ipynb b/notebooks/1. Implementing Sliceline on Titanic dataset.ipynb index 0e9c480..082a9f1 100644 --- a/notebooks/1. Implementing Sliceline on Titanic dataset.ipynb +++ b/notebooks/1. Implementing Sliceline on Titanic dataset.ipynb @@ -35,6 +35,12 @@ "ExecuteTime": { "end_time": "2022-09-01T08:52:04.294146Z", "start_time": "2022-09-01T08:52:03.399638Z" + }, + "execution": { + "iopub.execute_input": "2022-09-02T10:13:44.852719Z", + "iopub.status.busy": "2022-09-02T10:13:44.851997Z", + "iopub.status.idle": "2022-09-02T10:13:47.602048Z", + "shell.execute_reply": "2022-09-02T10:13:47.601335Z" } }, "outputs": [], @@ -121,6 +127,12 @@ "ExecuteTime": { "end_time": "2022-09-01T08:52:37.350437Z", "start_time": "2022-09-01T08:52:04.296725Z" + }, + "execution": { + "iopub.execute_input": "2022-09-02T10:13:47.606105Z", + "iopub.status.busy": "2022-09-02T10:13:47.605710Z", + "iopub.status.idle": "2022-09-02T10:14:20.072172Z", + "shell.execute_reply": "2022-09-02T10:14:20.071511Z" } }, "outputs": [ @@ -226,6 +238,12 @@ "ExecuteTime": { "end_time": "2022-09-01T08:52:37.366306Z", "start_time": "2022-09-01T08:52:37.352172Z" + }, + "execution": { + "iopub.execute_input": "2022-09-02T10:14:20.075611Z", + "iopub.status.busy": "2022-09-02T10:14:20.075234Z", + "iopub.status.idle": "2022-09-02T10:14:20.092728Z", + "shell.execute_reply": "2022-09-02T10:14:20.092076Z" } }, "outputs": [ @@ -547,6 +565,12 @@ "ExecuteTime": { "end_time": "2022-09-01T08:52:37.745108Z", "start_time": "2022-09-01T08:52:37.370418Z" + }, + "execution": { + "iopub.execute_input": "2022-09-02T10:14:20.096906Z", + "iopub.status.busy": "2022-09-02T10:14:20.096485Z", + "iopub.status.idle": "2022-09-02T10:14:20.445670Z", + "shell.execute_reply": "2022-09-02T10:14:20.444861Z" } }, "outputs": [ diff --git a/notebooks/2. Implementing Sliceline on California housing dataset.ipynb b/notebooks/2. Implementing Sliceline on California housing dataset.ipynb index 2b800ff..87c6ae4 100644 --- a/notebooks/2. Implementing Sliceline on California housing dataset.ipynb +++ b/notebooks/2. Implementing Sliceline on California housing dataset.ipynb @@ -35,6 +35,12 @@ "ExecuteTime": { "end_time": "2022-09-01T08:53:38.309704Z", "start_time": "2022-09-01T08:53:36.895001Z" + }, + "execution": { + "iopub.execute_input": "2022-09-02T10:14:22.748851Z", + "iopub.status.busy": "2022-09-02T10:14:22.748192Z", + "iopub.status.idle": "2022-09-02T10:14:24.620317Z", + "shell.execute_reply": "2022-09-02T10:14:24.619474Z" } }, "outputs": [], @@ -93,6 +99,12 @@ "ExecuteTime": { "end_time": "2022-09-01T08:58:36.911215Z", "start_time": "2022-09-01T08:54:26.938009Z" + }, + "execution": { + "iopub.execute_input": "2022-09-02T10:14:24.625327Z", + "iopub.status.busy": "2022-09-02T10:14:24.624806Z", + "iopub.status.idle": "2022-09-02T10:19:03.233452Z", + "shell.execute_reply": "2022-09-02T10:19:03.230071Z" } }, "outputs": [ @@ -185,6 +197,12 @@ "ExecuteTime": { "end_time": "2022-09-01T08:58:54.358814Z", "start_time": "2022-09-01T08:58:54.322244Z" + }, + "execution": { + "iopub.execute_input": "2022-09-02T10:19:03.310804Z", + "iopub.status.busy": "2022-09-02T10:19:03.301587Z", + "iopub.status.idle": "2022-09-02T10:19:03.360466Z", + "shell.execute_reply": "2022-09-02T10:19:03.359488Z" } }, "outputs": [ @@ -273,6 +291,12 @@ "ExecuteTime": { "end_time": "2022-09-01T08:59:12.024448Z", "start_time": "2022-09-01T08:59:11.627429Z" + }, + "execution": { + "iopub.execute_input": "2022-09-02T10:19:03.366548Z", + "iopub.status.busy": "2022-09-02T10:19:03.366135Z", + "iopub.status.idle": "2022-09-02T10:19:03.797418Z", + "shell.execute_reply": "2022-09-02T10:19:03.796534Z" } }, "outputs": [ diff --git a/poetry.lock b/poetry.lock index 215f2bc..23d2fec 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,11 @@ +[[package]] +name = "absl-py" +version = "1.2.0" +description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "alabaster" version = "0.7.12" @@ -6,6 +14,59 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "appnope" +version = "0.1.3" +description = "Disable App Nap on macOS >= 10.9" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "argon2-cffi" +version = "21.3.0" +description = "The secure Argon2 password hashing algorithm." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +argon2-cffi-bindings = "*" + +[package.extras] +dev = ["pre-commit", "cogapp", "tomli", "coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "sphinx-notfound-page", "furo"] +docs = ["sphinx", "sphinx-notfound-page", "furo"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] + +[[package]] +name = "argon2-cffi-bindings" +version = "21.2.0" +description = "Low-level CFFI bindings for Argon2" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +cffi = ">=1.0.1" + +[package.extras] +dev = ["pytest", "cogapp", "pre-commit", "wheel"] +tests = ["pytest"] + +[[package]] +name = "asttokens" +version = "2.0.8" +description = "Annotate AST trees with source code positions" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +six = "*" + +[package.extras] +test = ["astroid (<=2.5.3)", "pytest"] + [[package]] name = "atomicwrites" version = "1.4.0" @@ -39,6 +100,29 @@ python-versions = ">=3.6" [package.dependencies] pytz = ">=2015.7" +[[package]] +name = "backcall" +version = "0.2.0" +description = "Specifications for callback functions passed in to an API" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "beautifulsoup4" +version = "4.11.1" +description = "Screen-scraping library" +category = "dev" +optional = false +python-versions = ">=3.6.0" + +[package.dependencies] +soupsieve = ">1.2" + +[package.extras] +html5lib = ["html5lib"] +lxml = ["lxml"] + [[package]] name = "black" version = "22.6.0" @@ -61,6 +145,22 @@ d = ["aiohttp (>=3.7.4)"] jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] uvloop = ["uvloop (>=0.15.2)"] +[[package]] +name = "bleach" +version = "5.0.1" +description = "An easy safelist-based HTML-sanitizing tool." +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +six = ">=1.9.0" +webencodings = "*" + +[package.extras] +css = ["tinycss2 (>=1.1.0,<1.2)"] +dev = ["build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "Sphinx (==4.3.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)", "black (==22.3.0)", "mypy (==0.961)"] + [[package]] name = "certifi" version = "2022.6.15" @@ -69,6 +169,17 @@ category = "dev" optional = false python-versions = ">=3.6" +[[package]] +name = "cffi" +version = "1.15.1" +description = "Foreign Function Interface for Python calling C code." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +pycparser = "*" + [[package]] name = "charset-normalizer" version = "2.1.0" @@ -101,7 +212,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "coverage" -version = "6.4.1" +version = "6.4.4" description = "Code coverage measurement for Python" category = "dev" optional = false @@ -113,6 +224,53 @@ tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.1 [package.extras] toml = ["tomli"] +[[package]] +name = "cvxpy" +version = "1.2.1" +description = "A domain-specific language for modeling convex optimization problems in Python." +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +ecos = ">=2" +numpy = ">=1.15" +osqp = ">=0.4.1" +scipy = ">=1.1.0" +scs = ">=1.1.6" + +[[package]] +name = "cycler" +version = "0.11.0" +description = "Composable style cycles" +category = "dev" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "debugpy" +version = "1.6.3" +description = "An implementation of the Debug Adapter Protocol for Python" +category = "dev" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "decorator" +version = "5.1.1" +description = "Decorators for Humans" +category = "dev" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "defusedxml" +version = "0.7.1" +description = "XML bomb protection for Python stdlib modules" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + [[package]] name = "docutils" version = "0.17.1" @@ -121,6 +279,45 @@ category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +[[package]] +name = "ecos" +version = "2.0.10" +description = "This is the Python package for ECOS: Embedded Cone Solver. See Github page for more information." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +numpy = ">=1.6" +scipy = ">=0.9" + +[[package]] +name = "entrypoints" +version = "0.4" +description = "Discover and load entry points from installed packages." +category = "dev" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "executing" +version = "1.0.0" +description = "Get the currently executing AST node of a frame, and other information" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "fastjsonschema" +version = "2.16.1" +description = "Fastest Python implementation of JSON schema" +category = "dev" +optional = false +python-versions = "*" + +[package.extras] +devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"] + [[package]] name = "flake8" version = "3.9.2" @@ -134,6 +331,28 @@ mccabe = ">=0.6.0,<0.7.0" pycodestyle = ">=2.7.0,<2.8.0" pyflakes = ">=2.3.0,<2.4.0" +[[package]] +name = "fonttools" +version = "4.37.1" +description = "Tools to manipulate font files" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.extras] +all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] +graphite = ["lz4 (>=1.7.4.2)"] +interpolatable = ["scipy", "munkres"] +lxml = ["lxml (>=4.0,<5)"] +pathops = ["skia-pathops (>=0.5.0)"] +plot = ["matplotlib"] +repacker = ["uharfbuzz (>=0.23.0)"] +symfont = ["sympy"] +type1 = ["xattr"] +ufo = ["fs (>=2.2.0,<3)"] +unicode = ["unicodedata2 (>=14.0.0)"] +woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] + [[package]] name = "idna" version = "3.3" @@ -166,6 +385,21 @@ docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] perf = ["ipython"] testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] +[[package]] +name = "importlib-resources" +version = "5.9.0" +description = "Read resources from Python packages" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} + +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] + [[package]] name = "iniconfig" version = "1.1.1" @@ -174,6 +408,106 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "ipykernel" +version = "6.15.2" +description = "IPython Kernel for Jupyter" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +appnope = {version = "*", markers = "platform_system == \"Darwin\""} +debugpy = ">=1.0" +ipython = ">=7.23.1" +jupyter-client = ">=6.1.12" +matplotlib-inline = ">=0.1" +nest-asyncio = "*" +packaging = "*" +psutil = "*" +pyzmq = ">=17" +tornado = ">=6.1" +traitlets = ">=5.1.0" + +[package.extras] +test = ["flaky", "ipyparallel", "pre-commit", "pytest-cov", "pytest-timeout", "pytest (>=6.0)"] + +[[package]] +name = "ipython" +version = "8.4.0" +description = "IPython: Productive Interactive Computing" +category = "dev" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +appnope = {version = "*", markers = "sys_platform == \"darwin\""} +backcall = "*" +colorama = {version = "*", markers = "sys_platform == \"win32\""} +decorator = "*" +jedi = ">=0.16" +matplotlib-inline = "*" +pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} +pickleshare = "*" +prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" +pygments = ">=2.4.0" +stack-data = "*" +traitlets = ">=5" + +[package.extras] +all = ["black", "Sphinx (>=1.3)", "ipykernel", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.19)", "pandas", "trio"] +black = ["black"] +doc = ["Sphinx (>=1.3)"] +kernel = ["ipykernel"] +nbconvert = ["nbconvert"] +nbformat = ["nbformat"] +notebook = ["ipywidgets", "notebook"] +parallel = ["ipyparallel"] +qtconsole = ["qtconsole"] +test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] +test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "trio"] + +[[package]] +name = "ipython-genutils" +version = "0.2.0" +description = "Vestigial utilities from IPython" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "ipywidgets" +version = "8.0.1" +description = "Jupyter interactive widgets" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +ipykernel = ">=4.5.1" +ipython = ">=6.1.0" +jupyterlab-widgets = ">=3.0,<4.0" +traitlets = ">=4.3.1" +widgetsnbextension = ">=4.0,<5.0" + +[package.extras] +test = ["jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"] + +[[package]] +name = "jedi" +version = "0.18.1" +description = "An autocompletion tool for Python that can be used for text editors." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +parso = ">=0.8.0,<0.9.0" + +[package.extras] +qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] +testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] + [[package]] name = "jinja2" version = "3.1.2" @@ -196,6 +530,132 @@ category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "jsonschema" +version = "4.15.0" +description = "An implementation of JSON Schema validation for Python" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +attrs = ">=17.4.0" +importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} +pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""} +pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" + +[package.extras] +format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] +format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] + +[[package]] +name = "jupyter" +version = "1.0.0" +description = "Jupyter metapackage. Install all the Jupyter components in one go." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +ipykernel = "*" +ipywidgets = "*" +jupyter-console = "*" +nbconvert = "*" +notebook = "*" +qtconsole = "*" + +[[package]] +name = "jupyter-client" +version = "7.3.5" +description = "Jupyter protocol implementation and client libraries" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +entrypoints = "*" +jupyter-core = ">=4.9.2" +nest-asyncio = ">=1.5.4" +python-dateutil = ">=2.8.2" +pyzmq = ">=23.0" +tornado = ">=6.2" +traitlets = "*" + +[package.extras] +doc = ["ipykernel", "myst-parser", "sphinx-rtd-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt"] +test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] + +[[package]] +name = "jupyter-console" +version = "6.4.4" +description = "Jupyter terminal console" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +ipykernel = "*" +ipython = "*" +jupyter-client = ">=7.0.0" +prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" +pygments = "*" + +[package.extras] +test = ["pexpect"] + +[[package]] +name = "jupyter-core" +version = "4.11.1" +description = "Jupyter core package. A base package on which Jupyter projects rely." +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} +traitlets = "*" + +[package.extras] +test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] + +[[package]] +name = "jupyterlab-pygments" +version = "0.2.2" +description = "Pygments theme using JupyterLab CSS variables" +category = "dev" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "jupyterlab-widgets" +version = "3.0.2" +description = "Jupyter interactive widgets for JupyterLab" +category = "dev" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "kiwisolver" +version = "1.4.4" +description = "A fast implementation of the Cassowary constraint solver" +category = "dev" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "lxml" +version = "4.9.1" +description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" + +[package.extras] +cssselect = ["cssselect (>=0.7)"] +html5 = ["html5lib"] +htmlsoup = ["beautifulsoup4"] +source = ["Cython (>=0.29.7)"] + [[package]] name = "markupsafe" version = "2.1.1" @@ -204,6 +664,36 @@ category = "dev" optional = false python-versions = ">=3.7" +[[package]] +name = "matplotlib" +version = "3.5.3" +description = "Python plotting package" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +cycler = ">=0.10" +fonttools = ">=4.22.0" +kiwisolver = ">=1.0.1" +numpy = ">=1.17" +packaging = ">=20.0" +pillow = ">=6.2.0" +pyparsing = ">=2.2.1" +python-dateutil = ">=2.7" +setuptools_scm = ">=4,<7" + +[[package]] +name = "matplotlib-inline" +version = "0.1.6" +description = "Inline Matplotlib backend for Jupyter" +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.dependencies] +traitlets = "*" + [[package]] name = "mccabe" version = "0.6.1" @@ -212,6 +702,14 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "mistune" +version = "0.8.4" +description = "The fastest markdown parser in pure Python" +category = "dev" +optional = false +python-versions = "*" + [[package]] name = "mypy-extensions" version = "0.4.3" @@ -220,6 +718,113 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "nbclient" +version = "0.6.7" +description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." +category = "dev" +optional = false +python-versions = ">=3.7.0" + +[package.dependencies] +jupyter-client = ">=6.1.5" +nbformat = ">=5.0" +nest-asyncio = "*" +traitlets = ">=5.2.2" + +[package.extras] +sphinx = ["autodoc-traits", "mock", "moto", "myst-parser", "Sphinx (>=1.7)", "sphinx-book-theme"] +test = ["black", "check-manifest", "flake8", "ipykernel", "ipython", "ipywidgets", "mypy", "nbconvert", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"] + +[[package]] +name = "nbconvert" +version = "6.5.3" +description = "Converting Jupyter Notebooks" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +beautifulsoup4 = "*" +bleach = "*" +defusedxml = "*" +entrypoints = ">=0.2.2" +jinja2 = ">=3.0" +jupyter-core = ">=4.7" +jupyterlab-pygments = "*" +lxml = "*" +MarkupSafe = ">=2.0" +mistune = ">=0.8.1,<2" +nbclient = ">=0.5.0" +nbformat = ">=5.1" +packaging = "*" +pandocfilters = ">=1.4.1" +pygments = ">=2.4.1" +tinycss2 = "*" +traitlets = ">=5.0" + +[package.extras] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)", "tornado (>=6.1)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +serve = ["tornado (>=6.1)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)"] +webpdf = ["pyppeteer (>=1,<1.1)"] + +[[package]] +name = "nbformat" +version = "5.4.0" +description = "The Jupyter Notebook format" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +fastjsonschema = "*" +jsonschema = ">=2.6" +jupyter-core = "*" +traitlets = ">=5.1" + +[package.extras] +test = ["check-manifest", "testpath", "pytest", "pre-commit"] + +[[package]] +name = "nest-asyncio" +version = "1.5.5" +description = "Patch asyncio to allow nested event loops" +category = "dev" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "notebook" +version = "6.4.12" +description = "A web-based notebook environment for interactive computing" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +argon2-cffi = "*" +ipykernel = "*" +ipython-genutils = "*" +jinja2 = "*" +jupyter-client = ">=5.3.4" +jupyter-core = ">=4.6.1" +nbconvert = ">=5" +nbformat = "*" +nest-asyncio = ">=1.5" +prometheus-client = "*" +pyzmq = ">=17" +Send2Trash = ">=1.8.0" +terminado = ">=0.8.3" +tornado = ">=6.1" +traitlets = ">=4.2.1" + +[package.extras] +docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] +json-logging = ["json-logging"] +test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] + [[package]] name = "numpy" version = "1.23.0" @@ -228,6 +833,52 @@ category = "main" optional = false python-versions = ">=3.8" +[[package]] +name = "optbinning" +version = "0.15.0" +description = "OptBinning: The Python Optimal Binning library" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +matplotlib = "*" +numpy = ">=1.16.1" +ortools = ">=7.2" +pandas = "*" +ropwr = ">=0.2.0" +scikit-learn = ">=0.22.0" +scipy = ">=1.6.0" + +[package.extras] +distributed = ["pympler", "tdigest"] + +[[package]] +name = "ortools" +version = "9.4.1874" +description = "Google OR-Tools python libraries and modules" +category = "dev" +optional = false +python-versions = ">= 3.6" + +[package.dependencies] +absl-py = ">=0.13" +numpy = ">=1.13.3" +protobuf = ">=3.19.4" + +[[package]] +name = "osqp" +version = "0.6.2.post5" +description = "OSQP: The Operator Splitting QP Solver" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +numpy = ">=1.7" +qdldl = "*" +scipy = ">=0.13.2" + [[package]] name = "packaging" version = "21.3" @@ -259,6 +910,26 @@ pytz = ">=2020.1" [package.extras] test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] +[[package]] +name = "pandocfilters" +version = "1.5.0" +description = "Utilities for writing pandoc filters in python" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[[package]] +name = "parso" +version = "0.8.3" +description = "A Python Parser" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.extras] +qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] +testing = ["docopt", "pytest (<6.0.0)"] + [[package]] name = "pathspec" version = "0.9.0" @@ -267,6 +938,45 @@ category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +[[package]] +name = "pexpect" +version = "4.8.0" +description = "Pexpect allows easy control of interactive console applications." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +ptyprocess = ">=0.5" + +[[package]] +name = "pickleshare" +version = "0.7.5" +description = "Tiny 'shelve'-like database with concurrency support" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "pillow" +version = "9.2.0" +description = "Python Imaging Library (Fork)" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"] +tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"] + +[[package]] +name = "pkgutil-resolve-name" +version = "1.3.10" +description = "Resolve a name to an object." +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "platformdirs" version = "2.5.2" @@ -291,6 +1001,66 @@ python-versions = ">=3.6" dev = ["pre-commit", "tox"] testing = ["pytest", "pytest-benchmark"] +[[package]] +name = "prometheus-client" +version = "0.14.1" +description = "Python client for the Prometheus monitoring system." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.extras] +twisted = ["twisted"] + +[[package]] +name = "prompt-toolkit" +version = "3.0.31" +description = "Library for building powerful interactive command lines in Python" +category = "dev" +optional = false +python-versions = ">=3.6.2" + +[package.dependencies] +wcwidth = "*" + +[[package]] +name = "protobuf" +version = "4.21.5" +description = "" +category = "dev" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "psutil" +version = "5.9.1" +description = "Cross-platform lib for process and system monitoring in Python." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"] + +[[package]] +name = "ptyprocess" +version = "0.7.0" +description = "Run a subprocess in a pseudo terminal" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "pure-eval" +version = "0.2.2" +description = "Safely evaluate AST nodes without side effects" +category = "dev" +optional = false +python-versions = "*" + +[package.extras] +tests = ["pytest"] + [[package]] name = "py" version = "1.11.0" @@ -315,6 +1085,14 @@ category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +[[package]] +name = "pycparser" +version = "2.21" +description = "C parser in Python" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + [[package]] name = "pyflakes" version = "2.3.1" @@ -342,6 +1120,14 @@ python-versions = ">=3.6.8" [package.extras] diagrams = ["railroad-diagrams", "jinja2"] +[[package]] +name = "pyrsistent" +version = "0.18.1" +description = "Persistent/Functional/Immutable data structures" +category = "dev" +optional = false +python-versions = ">=3.7" + [[package]] name = "pytest" version = "6.2.5" @@ -414,6 +1200,82 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "pywin32" +version = "304" +description = "Python for Window Extensions" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "pywinpty" +version = "2.0.7" +description = "Pseudo terminal support for Windows from Python." +category = "dev" +optional = false +python-versions = ">=3.7" + +[[package]] +name = "pyzmq" +version = "23.2.1" +description = "Python bindings for 0MQ" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +cffi = {version = "*", markers = "implementation_name == \"pypy\""} +py = {version = "*", markers = "implementation_name == \"pypy\""} + +[[package]] +name = "qdldl" +version = "0.1.5.post2" +description = "QDLDL, a free LDL factorization routine." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +numpy = ">=1.7" +scipy = ">=0.13.2" + +[[package]] +name = "qtconsole" +version = "5.3.2" +description = "Jupyter Qt console" +category = "dev" +optional = false +python-versions = ">= 3.7" + +[package.dependencies] +ipykernel = ">=4.1" +ipython-genutils = "*" +jupyter-client = ">=4.1" +jupyter-core = "*" +pygments = "*" +pyzmq = ">=17.1" +qtpy = ">=2.0.1" +traitlets = "<5.2.1 || >5.2.1,<5.2.2 || >5.2.2" + +[package.extras] +doc = ["Sphinx (>=1.3)"] +test = ["flaky", "pytest", "pytest-qt"] + +[[package]] +name = "qtpy" +version = "2.2.0" +description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)." +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +packaging = "*" + +[package.extras] +test = ["pytest-qt", "pytest-cov (>=3.0.0)", "pytest (>=6,!=7.0.0,!=7.0.1)"] + [[package]] name = "requests" version = "2.28.1" @@ -432,6 +1294,19 @@ urllib3 = ">=1.21.1,<1.27" socks = ["PySocks (>=1.5.6,!=1.5.7)"] use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] +[[package]] +name = "ropwr" +version = "0.2.0" +description = "RoPWR: Robust Piecewise Regression" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +cvxpy = ">=1.0" +numpy = ">=1.16" +scikit-learn = ">=0.22" + [[package]] name = "scikit-learn" version = "1.1.1" @@ -463,6 +1338,47 @@ python-versions = ">=3.8,<3.11" [package.dependencies] numpy = ">=1.17.3,<1.25.0" +[[package]] +name = "scs" +version = "3.2.0" +description = "scs: splitting conic solver" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +numpy = ">=1.7" +scipy = ">=0.13.2" + +[[package]] +name = "send2trash" +version = "1.8.0" +description = "Send file to trash natively under Mac OS X, Windows and Linux." +category = "dev" +optional = false +python-versions = "*" + +[package.extras] +nativelib = ["pyobjc-framework-cocoa", "pywin32"] +objc = ["pyobjc-framework-cocoa"] +win32 = ["pywin32"] + +[[package]] +name = "setuptools-scm" +version = "6.4.2" +description = "the blessed package to manage your versions by scm tags" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +packaging = ">=20.0" +tomli = ">=1.0.0" + +[package.extras] +test = ["pytest (>=6.2)", "virtualenv (>20)"] +toml = ["setuptools (>=42)"] + [[package]] name = "six" version = "1.16.0" @@ -479,6 +1395,14 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "soupsieve" +version = "2.3.2.post1" +description = "A modern CSS selector implementation for Beautiful Soup." +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "sphinx" version = "4.5.0" @@ -597,6 +1521,38 @@ python-versions = ">=3.5" lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] +[[package]] +name = "stack-data" +version = "0.5.0" +description = "Extract data from python stack frames and tracebacks for informative displays" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +asttokens = "*" +executing = "*" +pure-eval = "*" + +[package.extras] +tests = ["cython", "littleutils", "pygments", "typeguard", "pytest"] + +[[package]] +name = "terminado" +version = "0.15.0" +description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +ptyprocess = {version = "*", markers = "os_name != \"nt\""} +pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""} +tornado = ">=6.1.0" + +[package.extras] +test = ["pre-commit", "pytest-timeout", "pytest (>=6.0)"] + [[package]] name = "threadpoolctl" version = "3.1.0" @@ -605,6 +1561,21 @@ category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "tinycss2" +version = "1.1.1" +description = "A tiny CSS parser" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +webencodings = ">=0.4" + +[package.extras] +doc = ["sphinx", "sphinx-rtd-theme"] +test = ["pytest", "pytest-cov", "pytest-flake8", "pytest-isort", "coverage"] + [[package]] name = "toml" version = "0.10.2" @@ -621,6 +1592,25 @@ category = "dev" optional = false python-versions = ">=3.7" +[[package]] +name = "tornado" +version = "6.2" +description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." +category = "dev" +optional = false +python-versions = ">= 3.7" + +[[package]] +name = "traitlets" +version = "5.3.0" +description = "" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.extras] +test = ["pre-commit", "pytest"] + [[package]] name = "typing-extensions" version = "4.3.0" @@ -642,6 +1632,30 @@ brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"] secure = ["pyOpenSSL (>=0.14)", 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