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Commits on Jul 12, 2021

• compare_abs argument in filter_rank_genes_groups (scverse#1649)

  Show description for e1bfb46
  Koncopd

  authored
  e1bfb46

• Start 1.8.2 release notes file (scverse#1945)

  Show description for 8460225
  ivirshup

  authored
  8460225

Commits on Jul 7, 2021

• Prep 1.8.1 (scverse#1937)

  Show description for 5f19a29
  ivirshup

  authored
  5f19a29

• Fix use_raw error with sc.tl.rank_genes_groups (scverse#1934)

  Show description for 3c72565
  ivirshup

  authored
  3c72565

Commits on Jul 5, 2021

• Fix paga_compare node positions (scverse#1898)

  Show description for d072abd
  ivirshup

  authored
  d072abd

• Score genes reproducibility fix (scverse#1890)

  Show description for 27b6fed
  

  Iwo-K

  and

  ivirshup

  authored
  27b6fed

• Fixes for pandas 1.3.0 (scverse#1918)

  Show description for c9b5913
  ivirshup

  authored
  c9b5913

Commits on Jun 30, 2021

• Start 1.8.1 release notes (scverse#1907)

  ivirshup

  authored
  87396a8

Commits on Jun 29, 2021

• Start release notes for 1.9.0 (scverse#1906)

  ivirshup

  authored
  93f927a

• Finalize release notes (scverse#1905)

  Show description for f732706
  

  ivirshup

  and

  giovp

  authored
  f732706

• add inline examples (scverse#1830)

  Show description for 450f092
  mayarali

  authored
  450f092

• Reorganize reference docs (scverse#1753)

  Show description for 7791e75
  ivirshup

  authored
  7791e75

• Fix latest doc builds scverse#1902

  Show description for 1be4091
  ivirshup

  authored
  1be4091

Commits on Jun 28, 2021

• Prepare for deprecation of dtypes (scverse#1903)

  ivirshup

  authored
  25e6381

Commits on Jun 27, 2021

• Ecosystem + community docs (scverse#1856)

  Show description for d3e6e42
  ivirshup

  authored
  d3e6e42

Commits on Jun 24, 2021

• Drop python 3.6 support (scverse#1897)

  Show description for 4f2a79d
  ivirshup

  authored
  4f2a79d

Commits on Jun 23, 2021

• Deprecate multicore tsne (scverse#1854)

  Show description for 7d455ae
  ivirshup

  authored
  7d455ae

• If raw was not used, use_raw should be False (scverse#1895)

  Show description for fb9e12f
  ivirshup

  authored
  fb9e12f

Commits on Jun 22, 2021

• new options to rank_genes_groups plots (scverse#1529)

  Show description for 9e1a27b
  

  fidelram

  and

  ivirshup

  authored
  9e1a27b

• Fix graph metrics when some variables are constant (scverse#1891)

  Show description for b70dee1
  ivirshup

  authored
  b70dee1

• Fixed randomness in tl.diffmap - compute_eigen (v0 argument) (scverse#1858)

  Show description for 0ffa787
  

  Iwo-K

  and

  ivirshup

  authored
  0ffa787

Commits on Jun 21, 2021

• Update unit test for mannwhitneyu to work with scipy 1.7 (scverse#1893)

  ivirshup

  authored
  41a4748

Commits on Jun 18, 2021

• Dict literal typos in _baseplot_class.py (scverse#1877)

  Show description for 84a80e7
  

  chris-rands

  and

  ivirshup

  authored
  84a80e7

• add_dendrogram c/p fix (scverse#1734)

  gokceneraslan

  authored
  b070920

• Make scrublet plotting function more like Scanpy standards for saving plot etc (scverse#1741)

  Show description for bc51523
  pinin4fjords

  authored
  bc51523

• update bbknn arguments and docstring (scverse#1868)

  Show description for 598842f
  

  ktpolanski

  and

  ivirshup

  authored
  598842f

• Added Cube Gene Learning Algorithm to Ecosystem (scverse#1883)

  Show description for ed364a8
  

  connerlambden

  and

  ivirshup

  authored
  ed364a8

• Set theme fix (scverse#1886)

  Show description for 825d910
  ivirshup

  authored
  825d910

Commits on May 26, 2021

• Add more pre-commit checks (scverse#1848)

  Show description for 4dd8de9
  Zethson

  authored
  4dd8de9

Commits on May 25, 2021

• Fix is_categorical and np.complex deprecations (scverse#1853)

  Show description for c68db2e
  ivirshup

  authored
  c68db2e

• Bug fix for smallest_dot in sc.pl.dotplot() (scverse#1771)

  Show description for ab9104c
  sjfleming

  authored
  ab9104c

Commits on May 17, 2021

• Fix ipython detection (scverse#1844)

  Show description for bcfa925
  ivirshup

  authored
  bcfa925

• Remove travis (scverse#1843)

  ivirshup

  authored
  ce46baa

Commits on May 3, 2021

• Inline example paga (scverse#1811)

  Show description for 525f08f
  

  le-ander

  and

  giovp

  authored
  525f08f

• add violin plot example (scverse#1814)

  Show description for 77c3bb3
  

  3 peopleauthored
  77c3bb3

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