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behaviorAnnotator.m
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behaviorAnnotator.m
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function behaviorAnnotator( fName, aName, tName )
% Caltech Behavior Annotator.
%
% Can only be used to annotated seq files. To annotate other types of video
% files, they need to be converted to seq files first. For example, to
% convert an avi file into an seq file, use the following command:
% seqIo([seqName],'frImgs',struct('codec','jpg'),'aviName',[aviName])
% Where [seqName] denotes the name of the seq you want to save to and
% [aviName] is the avi file. See seqIo and seqIo>frimgs for more details.
%
% Use arrow keys to play the video. Controls are as follows:
% (1) If stopped: [L] play backward, [R] play forward
% (2) If playing forward: [L] halve speed, [R] double speed, [U/D] stop
% (3) If playing backward: [L] double speed, [R] halve speed,[U/D] stop
% You can explicitly enter a frame or use the slider to jump in the video.
%
% USAGE
% behaviorAnnotator( [fName], [aName], [tName] )
%
% INPUTS
% fName - optional seq file to load at start
% aName - optional annotation file to load or import at start
% tName - optional tracking or detection file to load at start
%
% OUTPUTS
%
% EXAMPLE
% behaviorAnnotator
%
% See also behaviorData, seqIo
%
% Piotr's Computer Vision Matlab Toolbox Version 2.60
% Copyright 2014 Piotr Dollar. [pdollar-at-gmail.com]
% Licensed under the Simplified BSD License [see external/bsd.txt]
% handles to gui objects / other globals
[hFig,menu,pTop,pMid,pBot,dispApi,A,trk] = deal([]);
% initialize all
makeLayout();
menuApi = menuMakeApi();
dispApi = dispMakeApi();
annApi = annMakeApi();
menuApi.vidClose();
% open vid, annotation and tracking results if given
if(nargin>=1 && ~isempty(fName)), menuApi.vidOpen(fName); end
if(nargin>=2 && ~isempty(aName)), menuApi.annOpen(aName); end
if(nargin>=3 && ~isempty(tName)), menuApi.trkOpen(tName); end
function makeLayout()
% common properties
name = 'Caltech Behavior Annotator';
bg='BackgroundColor'; fg='ForegroundColor';
fs='FontSize'; ha='HorizontalAlignment';
units = {'Units','pixels'}; st='String'; ps='Position';
% initial figures size / pos
set(0,'Units','pixels'); ss = get(0,'ScreenSize');
if( ss(3)<800 || ss(4)<600 ); error('screen too small'); end;
figPos = [(ss(3)-600)/2 (ss(4)-500)/2 600 500];
% create main figure
figPrp = {'NumberTitle','off', 'Toolbar','auto', 'MenuBar','none', 'Color','k'};
hFig = figure(figPrp{:},'Visible','off', ps,figPos, 'Name',name );
set(hFig,'DeleteFcn',@exitProg,'ResizeFcn',@figResized);
% mid panel
pMid.hAx=axes(units{:},'Parent',hFig); set(pMid.hAx,'XTick',[],'YTick',[]);
pMid.hSl=uicontrol(hFig,'Style','slider','Min',0,'Max',1,bg,'k'); imshow(0);
pMid.hBar=uicontrol(hFig,'Style','pushbutton',units{:},'Enable','inactive');
pMid.hAdd=uicontextmenu('Parent',hFig); pMid.hAdds=[]; pMid.hTxt=[];
% top panel
pnlProp = [units {bg,[.1 .1 .1],'BorderType','none'}];
txtPrp = {'Style','text',bg,[.1 .1 .1],fg,'w',ha};
edtPrp = {'Style','edit',bg,[.1 .1 .1],fg,'w',ha};
pTop.h = uipanel(pnlProp{:},'Parent',hFig);
pTop.hBehLbl=uicontrol(pTop.h,txtPrp{:},'Left',st,'behavior:');
pTop.hBh=uicontrol(pTop.h,units{:},'Style','popupmenu',fg,'w',bg,'k',st,{''});
pTop.hFrmLbl=uicontrol(pTop.h,txtPrp{:},'Left',st,'frame:');
pTop.hFrmInd=uicontrol(pTop.h,edtPrp{:},'Right');
pTop.hTmLbl=uicontrol(pTop.h,txtPrp{:},'Left',st,'time:');
pTop.hTmVal=uicontrol(pTop.h,txtPrp{:},'Left');
pTop.hFrmNum=uicontrol(pTop.h,txtPrp{:},'Left');
pTop.hPlyLbl=uicontrol(pTop.h,txtPrp{:},'Left',st,'speed:');
pTop.hPlySpd=uicontrol(pTop.h,txtPrp{:},'Left',st,'0x');
% bottom panel
pBot.h=uipanel(pnlProp{:},'Parent',hFig); uiPr=[pBot.h,units,'Style'];
uiButPr=[uiPr,'pushbutton', bg,[.9 .9 .9], fs,11, 'FontWeight','bold'];
pBot.hStrm=uicontrol(uiPr{:},'popupmenu',fg,'w',bg,'k',st,{''});
pBot.hBh=uicontrol(uiPr{:},'popupmenu',fg,'w',bg,'k',st,{''});
pBot.hArrL=uicontrol(uiButPr{:},fg,'k',st,'<<');
pBot.hSl=uicontrol(uiPr{:},'slider',bg,'k');
pBot.hBar=uicontrol(uiPr{:},'pushbutton','Enable','inactive');
pBot.hArrR=uicontrol(uiButPr{:},fg,'k',st,'>>');
pBot.hSetL=uicontrol(uiPr{:},'pushbutton',fg,'k',bg,[.9 .9 .9],fs,8);
pBot.hSetR=uicontrol(uiPr{:},'pushbutton',fg,'k',bg,[.9 .9 .9],fs,8);
pBot.hZm=uicontrol(uiPr{:},'popupmenu',fg,'w',bg,'k',...
st,int2str2([30 60 120 250*2.^(0:5)]),'Value',5);
pBot.hDel=uicontrol(uiButPr{:},fg,[.5 0 0],st,'X');
% icons for set region button
I=ones(20,18); I(9:15,10:16)=triu(ones(7));
I(14:15,4:13)=0; I=repmat(I,[1 1 3]);
set(pBot.hSetL,'CData',I(:,end:-1:1,:));
set(pBot.hSetR,'CData',I);
% set the keyPressFcn for all focusable components (except popupmenus)
set( [hFig, pMid.hSl pBot.hArrL pBot.hSl pBot.hArrR ...
pBot.hSetL pBot.hSetR pBot.hDel], 'keyPressFcn',@keyPress );
% create menus
menu.hVid = uimenu(hFig,'Label','Video');
menu.hVidOpn = uimenu(menu.hVid,'Label','Open');
menu.hVidsOpn = uimenu(menu.hVid,'Label','Open dual');
menu.hVidExp = uimenu(menu.hVid,'Label','Export');
menu.hVidCls = uimenu(menu.hVid,'Label','Close');
menu.hVidInf = uimenu(menu.hVid,'Label','Info');
menu.hVidAud = uimenu(menu.hVid,'Label','Audio');
menu.hAnn = uimenu(hFig,'Label','Annotation');
menu.hAnnNew = uimenu(menu.hAnn,'Label','New');
menu.hAnnOpn = uimenu(menu.hAnn,'Label','Open');
menu.hAnnCls = uimenu(menu.hAnn,'Label','Close');
menu.hAnnSav = uimenu(menu.hAnn,'Label','Save');
menu.hAnnCnf = uimenu(menu.hAnn,'Label','Config');
menu.hAnnMrg = uimenu(menu.hAnn,'Label','Merge');
menu.hTrk = uimenu(hFig,'Label','Tracking');
menu.hTrkOpn = uimenu(menu.hTrk,'Label','Open');
menu.hTrkCls = uimenu(menu.hTrk,'Label','Close');
% set hFig to visible upon completion
set(hFig,'Visible','on'); drawnow;
function keyPress( h, evnt )
char=int8(evnt.Character); if(isempty(char)), char=0; end;
% arrow keys control either video, main slider, or bottom slider
if( char>=28 && char<=31 ) % L/R/U/D = 28/29/30/31
if( h==hFig )
if(char>=30), flag=0; else flag=double(char-28)*2-1; end
dispApi.setSpeedCb(flag);
elseif( h~=pBot.hSl && h~=pMid.hSl )
flag = mod(double(char),2)*2-1;
annApi.setFrame(flag);
end
return;
end
% all other keys require an annotation to be loaded
if(isempty(A)), return; end; bp=[];
% '-'/'=' control jumps, ','/'.' control moveLeft/Right
if(char=='-'), bp='prevBeh'; end
if(char=='='), bp='nextBeh'; end
if(char==','), bp='moveLeft'; end
if(char=='.'), bp='moveRight'; end
if(~isempty(bp)), annApi.buttonPress(bp); return; end
% make bindings for behavior creation
[member,type]=ismember( char, int8(A.getKeys()) );
if(member), annApi.insertBh(type); return; end;
end
function figResized( h, evnt ) %#ok<INUSD>
% aspect ratio of video
if(isempty(dispApi)), info=[]; else info=dispApi.getInfo(); end
if(isempty(info)), ar=4/3; else ar=info.width/info.height; end
% enforce minimum size (min width=500+pad*2)
pos=get(hFig,ps); pad=8; htBot=26; htSl=20; htTop=20;
mWd=500+pad*2; mHt=500/ar+htBot+htSl+htTop+pad*2;
persistent posPrv;
if(pos(3)<mWd || pos(4)<mHt && ~isempty(posPrv))
set(hFig,ps,[posPrv(1:2) mWd mHt]); figResized(); return;
end; posPrv=pos;
% overall layout
wd=pos(3)-2*pad; ht=pos(4)-2*pad-htSl-htTop-htBot;
wd=min(wd,ht*ar); ht=min(ht,wd/ar); x=(pos(3)-wd)/2; y=pad;
set(pBot.h,ps,[x y wd htBot]); y=y+htBot;
set(pMid.hSl,ps,[x y wd htSl]); y=y+htSl;
if(~isempty(pMid.hTxt)), set(pMid.hTxt,ps,[wd/2 ht]); end
set(pMid.hAx,ps,[x y wd ht]); y=y+ht;
set(pTop.h,ps,[x y wd htTop]);
% position stuff in top panel
x=10;
set(pTop.hBehLbl,ps,[x 3 50 14]); x=x+50;
set(pTop.hBh,ps,[x 7 140 14]); x=wd-300;
set(pTop.hPlyLbl,ps,[x 3 40 14]); x=x+40;
set(pTop.hPlySpd,ps,[x 3 40 14]); x=x+40;
set(pTop.hTmLbl,ps,[x 3 30 14]); x=x+30;
set(pTop.hTmVal,ps,[x 3 45 14]); x=x+50;
set(pTop.hFrmLbl,ps,[x 3 35 14]); x=x+35;
set(pTop.hFrmInd,ps,[x 3 50 16]); x=x+50;
set(pTop.hFrmNum,ps,[x 3 60 14]);
% position stuff in bottom panel
x=5; wd0=wd-325;
set(pBot.hStrm,ps,[x 5 35 20]); x=x+40;
set(pBot.hBh, ps,[x 5 85 20]); x=x+95;
set(pBot.hArrL,ps,[x 4 25 20]); x=x+25;
set(pBot.hSl, ps,[x 4 wd0 20]); x=x+wd0;
set(pBot.hArrR,ps,[x 4 25 20]); x=x+30;
set(pBot.hSetL,ps,[x 4 20 20]); x=x+20;
set(pBot.hSetR,ps,[x 4 20 20]); x=x+25;
set(pBot.hZm, ps,[x 5 50 20]); x=x+60;
set(pBot.hDel, ps,[x 4 20 20]);
% update display
if(~isempty(dispApi)); dispApi.requestUpdate(); end;
end
function exitProg( h, evnt ) %#ok<INUSD>
menuApi.vidClose();
end
end
function api = annMakeApi()
% create api
clrs=[]; fM=0;
api = struct( 'updateDisp',@updateDisp, 'updateAnn',@updateAnn, ...
'setFrame',@setFrame, 'buttonPress',@buttonPress, ...
'insertBh',@insertBh,'setCenter',@setCenter,'dispTrack',@dispTrack );
set( pBot.hStrm, 'callback', @(h,evnt) buttonPress('setStrm'));
set( pBot.hBh, 'callback', @(h,evnt) buttonPress('setType'));
set( pBot.hSetL, 'callback', @(h,evnt) buttonPress('moveLeft'));
set( pBot.hSetR, 'callback', @(h,evnt) buttonPress('moveRight'));
set( pBot.hDel, 'callback', @(h,evnt) buttonPress('delete'));
set( pBot.hArrL, 'callback', @(h,evnt) buttonPress('prevBeh'));
set( pBot.hArrR, 'callback', @(h,evnt) buttonPress('nextBeh'));
set( pBot.hSl, 'callback', @(h,evnt) setFrame(0));
set( pBot.hZm, 'callback', @(h,evnt) buttonPress('setZoom'));
set( pTop.hBh, 'callback', @(h,evnt) buttonPress('gotoBeh'));
function updateAnn()
% new annotation loaded or annotation closed
isAnn=~isempty(A); if(isAnn), en='on'; else en='off'; end;
hAll=[pTop.hBh pBot.hBh pBot.hSetL pBot.hArrL pBot.hSl ...
pBot.hArrR pBot.hSetR pBot.hZm pBot.hDel];
set(hAll,'Enable',en); set([pBot.hBar pMid.hBar],'Visible',en);
if(~isAnn), strs={''}; else strs=A.getNames(); end
set(pBot.hBh,'Value',1,'String',strs);
set(pTop.hBh,'Value',1,'String',{''});
if(~isAnn), strs={''}; else strs=int2str2(1:A.nStrm()); end
set(pBot.hStrm,'Value',1,'String',strs);
if(isAnn), clrs=[.3 .3 .3; uniqueColors(ceil((A.k()-1)/6),6)]; end
if(~isempty(pMid.hTxt)), set(pMid.hTxt,'String',''); end
% update context menu for inserting behaviors
if(isAnn), ns=A.getNames(); ks=A.getKeys(); k=A.k(); else k=0; end
delete(pMid.hAdds); pMid.hAdds=zeros(1,k);
ls=cell(1,k); for t=1:k, ls{t}=[ns{t} ' (' ks(t) ')']; end
for t=1:k, pMid.hAdds(t)=uimenu(pMid.hAdd,'Label',ls{t}); end
for t=1:k, set(pMid.hAdds(t),'callback',@(h,e) insertBh(t)); end
% finally update display
updateDisp();
end
function updateDisp()
if(isempty(A)), return; end
% get current frame / annotation info
f=dispApi.getFrame(); id=A.getId(f); type=A.getType(id); n=A.n();
nFrame=A.nFrame(); bs=A.getBnds(); ts=A.getTypes(); ns=A.getNames();
% set bounds for zoomed slider
h=pBot.hZm; s=get(h,'String'); v=get(h,'Value'); w=str2double(s{v});
fL=max(0,fM-w/2); fR=min(nFrame,fL+w); fL=max(0,fR-w);
% update standard GUI controls
clr={'ForegroundColor',clrs(type,:)};
set(pBot.hBh,'Value',type,clr{:}); ss=ns(ts);
for i=1:n, ss{i}=sprintf('%i-%i %s',bs(i)+1,bs(i+1),ss{i}); end
set(pTop.hBh,'String',ss,'Value',id,clr{:});
if( nFrame==1 ), set(pBot.hSl,'Enable','off'); else
set(pBot.hSl,'Min',fL,'Max',fR-1,'Value',f,'Enable','on');
s=1/(fR-fL-1); set(pBot.hSl,'SliderStep',[s s]);
end
% display text label containing info about every stream
strm0=get(pBot.hStrm,'Value'); nSt=A.nStrm(); s=cell(1,nSt);
for i=1:nSt, A.setStrm(i); j=A.getId(f);
s{i}=A.getName(j); if(i==strm0 && nSt>1), s{i}=['[' s{i} ']']; end
s{i}=['\color[rgb]{' num2str(clrs(A.getType(j),:)) '}' s{i} ' / '];
end
s=[s{:}]; s=s(1:end-3); s(s=='_')='-'; A.setStrm(strm0);
set(pMid.hTxt,'String',s);
% update hBar for zoomed slider
idL=A.getId(fL); idR=A.getId(fR-1);
bs1=[fL bs(idL+1:idR) fR]-fL; ts1=ts(idL:idR);
colBar( pBot.hBar, pBot.hSl, bs1, ts1, 4 );
% update hBar for main slider
colBar( pMid.hBar, pMid.hSl, bs, ts, 6, fL, fR );
% finally backup annotation
menuApi.annBackup();
function colBar( hBar, hSl, bs, ts, h, fL, fR )
% set position of hBar, adjust according to width of slider (8)
p=get(hSl,'Position'); w0=16; w1=(p(3)-2*w0)/(bs(end)-bs(1));
p(1)=p(1)+w0; p(2)=p(2)+p(4)-h; p(3)=p(3)-2*w0; p(4)=h;
if(w1<8), p(1)=p(1)+4; p(3)=p(3)+round(w1)-8; end
set(hBar,'Position',p); w=ceil(p(3)); h=ceil(p(4));
% get hbar image
nFrame=bs(end); bs=round(bs/nFrame*w); I=zeros(w,1);
for i1=1:length(ts), I(bs(i1)+1:bs(i1+1),:)=ts(i1); end
I=permute(clrs(I,:),[3 1 2]); I=I(ones(1,h),:,:);
if(nargin==7)
fL=round(fL/nFrame*w); fR=max(1,round(fR/nFrame*w));
I(:,[fL+1 fR],:)=1; I([1 end],fL+1:fR,:)=1;
end
set(hBar,'CData',I);
end
end
function setFrame(flag)
assert(~isempty(A)); rng=get(pBot.hSl,{'Min','Max'});
f = min(max(round(get(pBot.hSl,'Value')+flag),rng{1}),rng{2});
setCenter = (f==rng{1} && f>0) || (f==rng{2} && f<A.nFrame()-1);
set(pBot.hSl,'Value',f); dispApi.setFrame(f,0,setCenter);
end
function buttonPress( str )
assert(~isempty(A));
f=dispApi.getFrame(); id=A.getId(f);
switch str
case 'setStrm'
strm = get(pBot.hStrm,'Value');
A.setStrm(strm); dispApi.requestUpdate();
case 'setType'
type = get(pBot.hBh,'Value');
A.setType(id,type); dispApi.requestUpdate();
case 'moveRight'
if(id==A.n()), return; end %id==A.getId(get(pBot.hSl,'Max'))
A.move(id+1,f+1); dispApi.requestUpdate();
case 'moveLeft'
if(id==1), return; end %id==A.getId(get(pBot.hSl,'Min'))
A.move(id,f); dispApi.requestUpdate();
case 'delete'
A.setType(id,1); %A.delete( id );
dispApi.requestUpdate();
case 'prevBeh'
f1=A.getStart(id); if(id>1 && f==f1), f1=A.getStart(id-1); end
dispApi.setFrame(f1,0);
case 'nextBeh'
f1=A.getEnd(id); if(id<A.n()), f1=f1+1; end
dispApi.setFrame(f1,0);
case 'setZoom'
dispApi.setFrame(f,0)
case 'gotoBeh'
f1=A.getStart(get(pTop.hBh,'Value'));
dispApi.setFrame(f1,0);
otherwise
assert(false);
end
end
function insertBh( type )
if(isempty(A)), return; end
A.add(type,dispApi.getFrame());
dispApi.requestUpdate();
end
function setCenter( frame ), fM=round(frame); end
function hs = dispTrack( frame )
if(isempty(trk)), hs=[]; return; end; hs0=[]; hs1=[]; hs2=[];
cols=[0 1 0; 1 0 0; 0 0 1; 1 1 0; 0 1 1; 1 0 1];
if(isfield(trk,'bbs')) % display detections
bbs=trk.bbs{frame+1}; if(isempty(bbs)), bbs=zeros(0,6); end
bbs=bbs(bbs(:,5)>0,:); n=size(bbs,1);
hs0=zeros(1,n); rPrp={'LineWidth',2,'LineStyle','-','EdgeColor'};
if(size(bbs,2)==6), is=mod(bbs(:,6)-1,6)+1; else is=ones(1,n); end
for b=1:n, hs0(b)=rectangle('Position',bbs(b,1:4),rPrp{:},...
cols(is(b),:)); end
end
if(isfield(trk,'Y')) % display (x,y) tracking results
if(iscell(trk.Y)), Y=trk.Y{frame+1}; else Y=trk.Y(:,:,frame+1); end
if(isempty(Y)), Y=zeros(0,2); end; m=size(Y,1); hs1=zeros(1,m);
Y=max(Y,1); inf=dispApi.getInfo(); r=min(inf.width,inf.height)/70;
Y(:,2)=min(Y(:,2),inf.height); Y(:,1)=min(Y(:,1),inf.width);
rPrp={'LineWidth',2,'LineStyle','-','Curvature',[1 1],...
'EdgeColor','w','FaceColor'};
%D=pdist2(Y,Y)+diag(nan(m,1)); close=min(D)<125^2;
%for i=1:m, if(close(i)), cols(i,:)=max(.7,cols(i,:)); end; end
for i=1:m, hs1(i)=rectangle(rPrp{:},cols(i,:),...
'Position',[Y(i,:)-r 2*r 2*r]); end
end
if(isfield(trk,'E')) % display ellipse tracking results
if(iscell(trk.E)), E=trk.E{frame+1}; else E=trk.E(:,:,frame+1); end
if(isempty(E)), E=zeros(0,5); end; m=size(E,1); hs2=zeros(3,m);
hold on; for i=1:m, [hs2(1,i),hs2(2,i),hs2(3,i)]=plotEllipse(...
E(i,1),E(i,2),E(i,3),E(i,4),E(i,5),cols(i,:),[],2); end
hold off; hs2=hs2(:)';
end
hs = [hs0 hs1 hs2];
end
end
function api = dispMakeApi()
% create api
[sr, audio, info, nFrame, speed, curInd, hs, ...
hImg, needUpdate, prevTime, looping ]=deal([]);
api = struct( 'setVid',@setVid, 'setAud',@setAud, ...
'setSpeedCb',@setSpeedCb, 'getInfo',@getInfo, ...
'getFrame',@getFrame, 'setFrame',@setFrame, ...
'requestUpdate',@requestUpdate, 'exportVid',@exportVid );
set(pMid.hSl, 'Callback',@(h,evnt) setFrameCb(0));
set(pTop.hFrmInd,'Callback',@(h,evnt) setFrameCb(1));
function setVid( sr1 )
% reset local variables
if(isstruct(sr)), sr=sr.close(); end
if(~isempty(hs)), delete(hs); hs=[]; end
[sr, audio, info, nFrame, speed, curInd, hs, ...
hImg, needUpdate, prevTime, looping ]=deal([]);
sr=sr1; nFrame=0; looping=0; speed=-1; setFrame( 0, 0 );
% update GUI
if(~isstruct(sr)), cla(pMid.hAx); pMid.hTxt=[]; else
info=sr.getinfo(); nFrame=info.numFrames;
sr.seek(0); s=max(1e-6,1/(nFrame-1)); ss={'SliderStep',[s,s]};
if(nFrame>1), set(pMid.hSl,'Max',nFrame-1,ss{:}); end
hImg = imshow( zeros(info.height,info.width,'uint8') );
set(hImg,'UIContextMenu',pMid.hAdd);
pMid.hTxt=text(0,0,'','FontSize',25,'Units','pixels',...
'HorizontalAlignment','center', 'VerticalAlignment','top');
%fprintf('fps of video = %f\n', info.fps); % temp display
end
set(pMid.hSl,'Value',0); v=(nFrame>1)+1;
en={'off','on'}; set(pMid.hSl,'Enable',en{v});
en={'inactive','on'}; set(pTop.hFrmInd,'Enable',en{v});
set(pTop.hFrmInd,'String','0'); set(pTop.hTmVal,'String','0:00');
set(pTop.hFrmNum,'String',[' / ' int2str(nFrame)]);
% update display
feval(get(hFig,'ResizeFcn'));
requestUpdate();
end
function exportVid( nm )
% prompt for range of frames to export
prompt={'Start frame:','End frame:','Frame Skip','Quality (0-100)'};
wi=getInfo(); dfs={'1', num2str(wi.numFrames),'1','80'};
rng=str2double(inputdlg(prompt,'Select Export Range',1,dfs));
if(any(isnan(rng)) || rng(1)>rng(2)), error('invalid range'); end
f0=max(1,rng(1)); f1=min(rng(2),wi.numFrames); skip=max(1,rng(3));
wi.codec='jpg'; wi.quality=rng(4);
try %#ok<ALIGN> % export video
for f=f0:skip:f1
setFrame(f,0); I=getframe(pMid.hAx); I=I.cdata;
c=2; I=I(1+c:end-c,1+c:end-c,:); h=size(I,1); w=size(I,2);
if(f==f0), wi.height=h; wi.width=w; sw=seqIo(nm,'w',wi); end
sw.addframe(I);
end; sw.close();
catch err, sw.close(); throw(err); end
end
function setAud(y,fs,nb)
a = abs(1 - (length(y)/fs) / (nFrame/info.fps));
if(a>.01), error('Audio/video mismatch.'); end
audio.fPlay=audioplayer(y,fs,nb);
audio.bPlay=audioplayer(flipud(y),fs,nb);
audio.fs=fs; audio.ln=length(y); setSpeed(speed);
requestUpdate();
end
function dispLoop()
if(looping), return; end; looping=1;
while( 1 )
% exit if appropriate, or if vid not loaded do nothing
if(~isstruct(sr) || ~isstruct(info)), looping=0; return; end
% stop playing video if at begin/end
if((speed>0&&curInd==nFrame-1) || (speed<0&&curInd==0))
setSpeed(0); needUpdate=1;
end
% increment/decrement curInd appropriately
if( speed~=0 )
t=clock(); eTime=etime(t,prevTime);
del = speed * max(10,info.fps) * min(.1,eTime);
if( speed>0 ), del=min(del, nFrame-curInd-1 ); end
if( speed<0 ), del=max(del, -curInd ); end
setFrame(curInd+del, speed); prevTime=t; needUpdate=1;
end
% update display if necessary
if(~needUpdate), looping=0; return; else
sr.seek( round(curInd) ); I=sr.getframe();
if(~isempty(hs)), delete(hs); hs=[]; end
hs=annApi.dispTrack(round(curInd));
assert(~isempty(I)); set(hImg,'CData',I);
set(pMid.hSl,'Value',curInd); c=round(curInd/info.fps);
set(pTop.hFrmInd,'String',int2str(round(curInd+1)));
c0=floor(c/3600); c=mod(c,3600); c1=floor(c/60); c2=mod(c,60);
if(~c0), set(pTop.hTmVal,'String',sprintf('%i:%02i',c1,c2)); else
set(pTop.hTmVal,'String',sprintf('%i:%02i:%02i',c0,c1,c2)); end
annApi.updateDisp(); needUpdate=false; drawnow();
end
end
end
function setSpeedCb( flag )
if(~isstruct(sr)),return; end
if( flag==0 )
setSpeed( 0 );
elseif( speed==0 )
setSpeed( flag ); prevTime=clock();
elseif( sign(speed)==flag && abs(speed)<2^12 )
setSpeed( speed*2 );
elseif( sign(speed)~=flag && abs(speed)>1/8 )
setSpeed( speed/2 );
elseif( sign(speed)~=flag )
setSpeed( 0 );
end
requestUpdate();
end
function setSpeed( speed1 )
if((speed1>0&&curInd==nFrame-1)||(speed1<0&&curInd==0)),speed1=0;end
speed=speed1; p=abs(speed); if(speed<0), ss='-'; else ss=''; end
if(p<1 && p~=0), s=['1/' int2str(1/p)]; else s=int2str(p); end
set(pTop.hPlySpd,'String',[ss s 'x']);
if(~isempty(audio))
stop(audio.fPlay); stop(audio.bPlay); if(speed==0), return; end;
st=curInd/(nFrame-1); if(speed<0), st=1-st; end; st=st*audio.ln+1;
if(speed>0), plr=audio.fPlay; else plr=audio.bPlay; end;
set(plr,'SampleRate',audio.fs*p); play(plr,st);
end
end
function setFrameCb(flag)
if( flag==0 )
f=round(get(pMid.hSl,'Value')); set(pMid.hSl,'Value',f);
elseif(flag==1)
f=str2double(get(pTop.hFrmInd,'String'));
if(isnan(f)), requestUpdate(); return; else f=f-1; end
end
setFrame(f,0);
end
function setFrame( curInd1, speed1, setCenter )
curInd=max(0,min(curInd1,nFrame-1));
if( speed~=speed1 ), setSpeed(speed1); end
if(nargin<3 || setCenter), annApi.setCenter(curInd); end
requestUpdate();
end
function requestUpdate(), needUpdate=true; dispLoop(); end
function info1 = getInfo(), info1=info; end
function curInd1 = getFrame(), curInd1=round(curInd); end
end
function api = menuMakeApi()
% create api
[fVid, fAnn, lastSave]=deal([]);
api = struct('vidClose',@vidClose, 'annClose',@annClose, ...
'vidOpen',@vidOpen, 'audOpen',@audOpen, 'trkOpen',@trkOpen, ...
'annOpen',@annOpen, 'annBackup',@annBackup );
set(menu.hVidOpn,'Callback',@(h,envt) vidOpen(1) );
set(menu.hVidsOpn,'Callback',@(h,envt) vidOpen(2) );
set(menu.hVidExp,'Callback',@(h,envt) vidExport() );
set(menu.hVidCls,'Callback',@(h,envt) vidClose() );
set(menu.hVidInf,'Callback',@(h,envt) vidInfo() );
set(menu.hVidAud,'Callback',@(h,envt) audOpen() );
set(menu.hAnnNew,'Callback',@(h,envt) annNew(0) );
set(menu.hAnnOpn,'Callback',@(h,envt) annOpen(0) );
set(menu.hAnnCls,'Callback',@(h,envt) annClose() );
set(menu.hAnnSav,'Callback',@(h,envt) annSave() );
set(menu.hAnnCnf,'Callback',@(h,envt) annNew(1) );
set(menu.hAnnMrg,'Callback',@(h,envt) annOpen(1) );
set(menu.hTrkOpn,'Callback',@(h,envt) trkOpen(0) );
set(menu.hTrkCls,'Callback',@(h,envt) trkOpen([]) );
function updateMenus()
m=menu; if(isempty(fVid)), en='off'; else en='on'; end
set([m.hVidExp m.hVidCls m.hVidInf m.hVidAud m.hAnnNew m.hAnnOpn ...
m.hTrkOpn m.hTrkCls],'Enable',en);
if(isempty(A)), en='off'; else en='on'; end
set([m.hAnnSav m.hAnnCls m.hAnnCnf m.hAnnMrg],'Enable',en);
nm='Caltech Behavior Annotator';
if(~isempty(fVid)), [~,nm1]=fileparts(fVid); nm=[nm ' - ' nm1]; end
set(hFig,'Name',nm); annApi.updateAnn(); dispApi.requestUpdate();
end
function vidClose()
if(~isempty(A)), annClose(); end; trkOpen([]);
fVid=[]; dispApi.setVid([]); updateMenus();
end
function vidOpen( flag )
if(isempty(fVid)), d='.'; else d=fileparts(fVid); end
if(all(ischar(flag)))
[d,f]=fileparts(flag); if(isempty(d)), d='.'; end;
d=[d '/']; f=[f '.seq']; flag=1;
elseif( flag==1 )
[f,d]=uigetfile('*.seq','Select video',[d '/*.seq']);
elseif( flag==2 )
[f,d]=uigetfile('*.seq','Select first video',[d '/*.seq']);
[f2,d2]=uigetfile('*.seq','Select second video',[d '/*.seq']);
if( f2==0 ), return; end
end
if( f==0 ), return; end; vidClose(); fVid=[d f];
try
if( flag==1 ), sr=seqIo(fVid,'r'); else
sr=seqIo({fVid,[d2 f2]},'rdual'); end
dispApi.setVid(sr); updateMenus();
catch er
errordlg(['Failed to load: ' fVid '. ' er.message],'Error');
fVid=[]; return;
end
end
function vidInfo()
info=dispApi.getInfo(); txt=evalc('disp(info);'); %#ok<NASGU>
while(txt(end)==10), txt=txt(1:end-1); end; txt=[char([10 10]) txt];
pos=get(hFig,'Position'); pos(1:2)=pos(1:2)+100; pos(3:4)=[400 400];
h=figure('NumberTitle','off', 'Toolbar','auto', ...
'Color','k', 'MenuBar','none', 'Visible','on', ...
'Name','', 'Resize','off','Position',pos); pos(1:2)=0;
uicontrol(h,'Style','text','FontSize',10,'BackgroundColor','w',...
'HorizontalAlignment','left','Position',pos,'String',txt,...
'FontName','FixedWidth');
end
function vidExport()
assert(~isempty(fVid)); fNm=[fVid(1:end-4) '-copy.seq'];
[f,d] = uiputfile('*.seq','Select export file',fNm);
if(f==0), return; end; f=[d f];
try dispApi.exportVid(f); catch er
errordlg(['Failed to export: ' f '. ' er.message],'Error'); end
end
function audOpen( fAud )
if( nargin==0 ), [f,d]=uigetfile('*.wav','Select audio',...
[fVid(1:end-3) 'wav']); if(f==0), return; end; fAud=[d f]; end
try
[y,fs,nb]=wavread(fAud); dispApi.setAud(y,fs,nb); %#ok<REMFF1>
catch er
errordlg(['Failed to load: ' fAud '. ' er.message],'Error');
end
end
function annClose()
assert(~isempty(A)); qstr='Save Current Annotation?';
button = questdlg(qstr,'Save','yes','no','yes');
if(strcmp(button,'yes')); annSave(); end
[fAnn,A,lastSave]=deal([]); updateMenus();
end
function annOpen( flag )
assert(~isempty(fVid)); A1=A; if(~isempty(A)), annClose(); end; e='';
if( all(ischar(flag)) ), f=flag; flag=0;
[d,f,e]=fileparts(f); if(isempty(d)), d='.'; end; d=[d '/'];
if(isempty(e) && exist([d f '.txt'],'file')), e='.txt'; end
if(isempty(e) && exist([d f '.bAnn'],'file')), e='.bAnn'; end
else
if(isempty(fAnn)), fAnn=[fVid(1:end-3) 'txt']; end
[f,d]=uigetfile('*.txt;*.bAnn','Select Annotation',fAnn);
end
if( f==0 ), return; end; fAnn=[d f e];
try
if( flag==1 )
A=A1; assert(~isempty(A)); A.merge(fAnn);
elseif( flag==0 )
A=behaviorData('load',fAnn);
info=dispApi.getInfo(); nFrame=info.numFrames;
if(A.nFrame()~=nFrame), error('Annotation/video mismatch.'); end
end
updateMenus();
catch er
errordlg(['Failed to load: ' fAnn '. ' er.message],'Error');
[fAnn,A,lastSave]=deal([]); return;
end
end
function annSave()
assert(~isempty(fVid) && ~isempty(A) && ~isempty(fAnn));
[f,d] = uiputfile('*.txt;*.bAnn','Select annotation',fAnn);
if( f==0 ), return; end; fAnn=[d f]; A.save(fAnn);
end
function annNew( update )
assert(~isempty(fVid)); A1=A; if(~isempty(A)), annClose(); end
fNm=[fileparts(fVid) '/config.txt'];
[f,d] = uigetfile('*.txt','Select config file',fNm);
if( f==0 ), return; end; f=[d f]; fAnn=[fVid(1:end-3) 'txt'];
try
if( update )
A=A1; assert(~isempty(A)); A.recreate(f); updateMenus();
else
info=dispApi.getInfo(); nFrame=info.numFrames;
A=behaviorData('create',f,nFrame); updateMenus();
end
catch er
errordlg(er.message, 'File Error'); A=[];
end
end
function annBackup()
if( isempty(lastSave) || etime(clock,lastSave)>60 )
[d,f]=fileparts(fAnn); f=[d '/' f '-backup.txt'];
assert(~isempty(A)); A.save(f); lastSave=clock();
end
end
function trkOpen( flag )
if(isempty(flag)), trk=[]; dispApi.requestUpdate(); return; end
if( all(ischar(flag)) ), f=flag; else fNm=[fVid(1:end-3) 'mat'];
[f,d]=uigetfile('*.mat','Load Tracking',fNm); f=[d f];
end
assert(~isempty(fVid)); if(f==0), return; end
try
tmp=load(f); assert(any(isfield(tmp,{'Y','bbs','E'})));
if(isfield(tmp,'Y')), trk.Y=tmp.Y; T=size(trk.Y,3);
elseif(isfield(tmp,'bbs')), trk.bbs=tmp.bbs; T=length(trk.bbs);
elseif(isfield(tmp,'E')), trk.E=tmp.E; T=size(trk.E,3);
end
info=dispApi.getInfo(); nFrame=info.numFrames;
if(T~=nFrame), error('Tracking/video mismatch.'); end
catch er
trk=[]; errordlg(['Failed to load: ' f '. ' er.message],'Error');
end
dispApi.requestUpdate();
end
end
end