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Add core ecological interactions #2
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Some of the classes me be more appropriate for NBO. Although I appreciate that NBO is not in an optimal state for ecologists right now - what do you think @pmidford? The goal is to coordinate the ixn relations with classes using the obscure OWL pattern here: |
Yes, that predator avoidance subtree looks like it would belong in NBO. We will be adding terms from ABO (coming from a Behavioral Ecology/Ethology ground) soon. We've already updated some definitions in NBO, and will be adding synonyms and child terms soon. Reorganizing the core of NBO will be more of a challenge, but we (@aclark-binghamton-edu, @swmargulis, and myself) have a list of changes that would improve the core, with, we believe, little impact on existing use cases. |
HI Peter
I didn’t get the intermediary email or response…can you fill me in on what your response is a reply to??
Thanks,
Anne
Anne B. Clark, Ph.D.
Biological Sciences
Binghamton University
Binghamton, NY 13902
1-607-777-6228, Fax -777-6521
C. 607-222-0905
We are speaking where we stand and we shall stand afterwards in the presence of what we have said.--Wendell Berry—"Standing By Words"
… On Aug 15, 2017, at 12:03 PM, Peter E. Midford ***@***.***> wrote:
Yes, that predator avoidance subtree looks like it would belong in NBO. We will be adding terms from ABO (coming from a Behavioral Ecology/Ethology ground) soon. We've already updated some definitions in NBO, and will be adding synonyms and child terms soon. Reorganizing the core of NBO will be more of a challenge, but we ***@***.*** <https://github.com/aclark-binghamton-edu>, @swmargulis <https://github.com/swmargulis>, and myself) have a list of changes that would improve the core, with, we believe, little impact on existing use cases.
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At the bottom of the email, there is a link to the GitHub issue. The whole
conversation will be there. If you can't find the link, l can send it when
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On Aug 15, 2017 09:12, "aclark-binghamton-edu" <[email protected]>
wrote:
… HI Peter
I didn’t get the intermediary email or response…can you fill me in on what
your response is a reply to??
Thanks,
Anne
Anne B. Clark, Ph.D.
Biological Sciences
Binghamton University
Binghamton, NY 13902
1-607-777-6228 <(607)%20777-6228>, Fax -777-6521
C. 607-222-0905 <(607)%20222-0905>
We are speaking where we stand and we shall stand afterwards in the
presence of what we have said.--Wendell Berry—"Standing By Words"
> On Aug 15, 2017, at 12:03 PM, Peter E. Midford ***@***.***>
wrote:
>
> Yes, that predator avoidance subtree looks like it would belong in NBO.
We will be adding terms from ABO (coming from a Behavioral Ecology/Ethology
ground) soon. We've already updated some definitions in NBO, and will be
adding synonyms and child terms soon. Reorganizing the core of NBO will be
more of a challenge, but we ***@***.*** <
https://github.com/aclark-binghamton-edu>, @swmargulis <
https://github.com/swmargulis>, and myself) have a list of changes that
would improve the core, with, we believe, little impact on existing use
cases.
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub <https://github.com/
EcologicalSemantics/ecocore#2#issuecomment-322510187>, or mute the
thread <https://github.com/notifications/unsubscribe-
auth/AOl5ls8RHIpPZJFxXcF_NJllOaw-Aj5Rks5sYcFogaJpZM4O25Fb>.
>
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I didn't get it either.
Sent from my iPhone
On Aug 15, 2017, at 12:12 PM, aclark-binghamton-edu <[email protected]<mailto:[email protected]>> wrote:
HI Peter
I didn’t get the intermediary email or response…can you fill me in on what your response is a reply to??
Thanks,
Anne
Anne B. Clark, Ph.D.
Biological Sciences
Binghamton University
Binghamton, NY 13902
1-607-777-6228, Fax -777-6521
C. 607-222-0905
We are speaking where we stand and we shall stand afterwards in the presence of what we have said.--Wendell Berry—"Standing By Words"
On Aug 15, 2017, at 12:03 PM, Peter E. Midford ***@***.******@***.***>> wrote:
Yes, that predator avoidance subtree looks like it would belong in NBO. We will be adding terms from ABO (coming from a Behavioral Ecology/Ethology ground) soon. We've already updated some definitions in NBO, and will be adding synonyms and child terms soon. Reorganizing the core of NBO will be more of a challenge, but we ***@***.*** <https://github.com/aclark-binghamton-edu>, @swmargulis <https://github.com/swmargulis>, and myself) have a list of changes that would improve the core, with, we believe, little impact on existing use cases.
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xref: #9 |
@cmungall @pmidford We're more than happy to import, we'd just need some fairly quick term creation for the initial stages. We need to represent the various forms of feeding (fungivory etc) as processes; this seems to be in accordance with the NBO definition for behavior , but isn't aligned to BFO. ECOCORE would then host the classes for the fungivores, the heterotrophs, etc
@pmidford ETA? |
I think our part of the term additions could be done in 1-2 weeks, then we'll have to convince Robert it's time to do an update release. |
Great! Should we create issues on NBO for the terms we'd need? We'll continue to create the defined terms for the organisms that realize such behaviours in ECOCORE. |
What is the current state of this? Looks like we are waiting for a good time to do an NBO import into ecocore? |
All checked terms are in ecocore-edit |
I'm not sure that hunting, trapping, or viral predation are appropriate terms to add here |
All checked terms are in latest release v2018-09-11 |
Whats the difference between plant trophism and herbivory? Maybe they should be synonyms. |
At most they should be synonyms--that is the only definition of plant
trophism. Looking at usage, depending on English language speakers, plant
trophism is often confused with plant TROPISM. Make it a synonym.
Also note need for reorganization of heirarchy to simplify and clarify.
Viral predation of bacteria belongs under Bacterivory (if that is a term in
common use)
Carnivory belongs under heterotrophy but under carnivory, the list should
be scavenging, predation (or depredation), and under predation, egg
predation OR oophagy (synonyms?) and cannibalism. The various methods of
predation are elaborated in NBO--the ABO part of it.
Anne
…On Thu, Jan 24, 2019 at 10:05 AM diatomsRcool ***@***.***> wrote:
Whats the difference between plant trophism and herbivory? Maybe they
should be synonyms.
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--
Anne B. Clark, Ph.D.
Biological Sciences
Binghamton University
Binghamton, NY 13902-6000
(607) 777-6228 (office)
(607) 222-0905 (cell)
(607) 777-6521 (fax-Dept office)
|
hunting, ambush, and trapping added to NBO import |
I'm requesting stotting be added to NBO. The others will wait until we have a need for more specific terms. |
Reminder to future Anne....you have editing rights in NBO |
Likely overlap with with REX and RO-ECO, often will specialise terms existing in these ( @cmungall )
Initial set
interactions
Misc
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