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Standalone macOS Jupyter App

Swift 32 2 Updated Oct 6, 2021
Python 2 Updated Aug 21, 2023

A QIIME 2 plugin for interaction with the Greengenes2 database

Python 27 3 Updated Oct 1, 2024

A simple keylogger for macOS

Objective-C 24 6 Updated Sep 29, 2021

Emperor a tool for the analysis and visualization of large microbial ecology datasets

JavaScript 53 50 Updated Jan 9, 2024

A package for creating and managing sample identifiers in comparative -omics datasets.

Jupyter Notebook 23 7 Updated Jan 30, 2017

Woltka: a versatile meta'omic data classifier

Python 71 25 Updated Oct 8, 2024

Automatic identification of kiwi calls from audio recordings

Python 51 15 Updated Apr 23, 2015

Phylogenetic Organization of Metagenomic Signals (POMS)

R 19 Updated Dec 19, 2022

Regularized kernel canonical correlation analysis in Python

Python 245 73 Updated Jul 6, 2021

Graph Signal Processing in Python

Python 493 94 Updated Sep 9, 2021

The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

Python 9,856 753 Updated Dec 30, 2024

An R package for learning log-ratio biomarkers from high-throughput sequencing data.

HTML 22 3 Updated Mar 31, 2023
Python 6 2 Updated May 25, 2022
R 17 5 Updated Dec 2, 2022

Anomaly detection related books, papers, videos, and toolboxes

Python 8,474 1,752 Updated Dec 21, 2024

Neutral evolution modeling of microbes.

Jupyter Notebook 3 1 Updated Nov 1, 2021

Build a partitioned pangenome graph from microbial genomes

Python 245 30 Updated Dec 18, 2024

Fast multi-line FASTA/Q reader in several programming languages

C 174 59 Updated Jun 6, 2021

Formulas for mixed-effects models in Python

Python 57 14 Updated Sep 22, 2024

Sensitivity Analysis Library in Python. Contains Sobol, Morris, FAST, and other methods.

Python 892 239 Updated Oct 10, 2024

The official repository of Spoon plugins

Lua 454 140 Updated Oct 10, 2024

Setting an objective minimum read count threshold for low biomass 16S rRNA gene amplicon sequencing data using serially diluted mock communities

Jupyter Notebook 1 Updated Oct 28, 2020

Productive macOS keyboard-driven navigation

Swift 3,465 127 Updated Dec 31, 2022

Adds vim keybindings to all OS X inputs

Lua 704 33 Updated Apr 11, 2023

This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

Python 9 2 Updated Aug 1, 2023

Parse Illumina sample sheets with Python

Python 50 17 Updated Mar 20, 2024

Keep track on time used on tasks in different projects

Swift 1 Updated Sep 20, 2020

R package for color themes inspired by national parks

R 220 16 Updated Oct 27, 2019

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

Python 105 16 Updated Mar 30, 2020
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