📝 Clarify sequence of steps

[shnizzedy]

Related problem

Time series extraction: It is not clear at which step the time series is extracted,e.g. after minimal preprocessing, after nuisance regression, etc.?

Network centrality, ReHo, ALFF. Similar question, at which step these will be calculated?

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Nuisance regression. 2-nuisance regression. What is the bandPass option here? Is it band-pass filtering on the regressor or just adds band-pass filtering to filter the data? Doesn’t matter if selected or not, it always shows as selected.

Nuisance regression - Regressor mask. No document for this option. are the options “csf_erosion_prop”, “csf_mask_erosion_mm”, “csf_erosion_mm” OR or AND? What does it mean “csf_erosion_prop”? Use the probability map to threshold the mask? Or it means that keep e.g. 0.6 proportion of a given tissue mask that defined in the earlier step? And, default 30mm for “GM_mask_erosion_mm” seems off, too big.

How can we select fork GSR and noGSR in the GUI? If can’t do it in GUI, could we have a note in GUI to tell the user how to fork this option in the config?

Originally posted by @TingsterX in FCP-INDI/C-PAC_GUI#131 (comment)

Proposed feature

In addition to the flowchart, include information in each step regarding what comes before / after

Acceptance criteria

• Each step of the documentation includes information about that step's place in the sequence / its inputs and outputs

Alternatives

No response

Additional context

No response