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Commits on Mar 19, 2019

• Use pandas to read txt files

  

  jgould

  committed
  4be0598

Commits on Mar 14, 2019

• save learned growth. Renamed local_enrichment to diff_exp.

  

  jgould

  committed
  c922d93

Commits on Mar 13, 2019

• updated images

  

  jgould

  committed
  f567478

• Updated images and documentation

  

  jgould

  committed
  210c994

Commits on Mar 12, 2019

• Merge pull request broadinstitute#38 from gamazeps/fix_is

  Show description for b698b5c
  joshua-gould

  authored
  b698b5c

• Replace is for == when testing equality with literals

  Show description for ec99e07
  gamazeps

  committed
  ec99e07

Commits on Feb 28, 2019

• Bug fixes to local enrichment

  

  jgould

  committed
  623bcdc

Commits on Feb 27, 2019

• added title to plot

  

  jgould

  committed
  e5049ed

• use anndata[] instead of anndata.X[]

  

  jgould

  committed
  f156575

Commits on Feb 26, 2019

• use anndata.shape instead of anndata.X.shape

  

  jgould

  committed
  c693376

• Updated defaults

  

  jgould

  committed
  d4e66b1

Commits on Feb 25, 2019

• Added plotting to command line tools

  

  jgould

  committed
  3bd9786

• Added plots

  

  jgould

  committed
  45c4953

• Added additional flags

  

  jgould

  committed
  cf3e4c1

• Added workflows

  

  jgould

  committed
  9e12a8a

Commits on Feb 23, 2019

• removed section

  

  jgould

  committed
  43924b6

• Updated install instructions

  

  jgould

  committed
  3d86170

• Updated README

  

  jgould

  committed
  1751d22

Commits on Feb 22, 2019

• updated validation example code

  

  jgould

  committed
  31b4bda

• Initialize timepoints at end of constructor

  

  jgould

  committed
  29a6d8f

Commits on Feb 21, 2019

• Remove cells with no days information

  

  jgould

  committed
  8780ac9

• fixed parsing parameter file

  

  jgould

  committed
  d796a0b

• remove unnecessary statements

  

  jgould

  committed
  bb52e6e

• bump

  

  jgould

  committed
  03be462

• Updated examples and trajectory days argument name

  

  jgould

  committed
  e2bfdc1

Commits on Feb 20, 2019

• docker

  

  jgould

  committed
  b9fd1b5

• permute genes to compute p-vaues

  

  jgould

  committed
  81624c1

• Read in parameters from file

  

  jgould

  committed
  1c12101

• Updated header

  

  jgould

  committed
  1d62d16

• Updated links

  

  jgould

  committed
  fc1ab10

• Updated header

  

  jgould

  committed
  1e616b8

• removed extra python statement

  

  jgould

  committed
  e01ce6e

• Updated documentation

  

  jgould

  committed
  076beff

Commits on Feb 19, 2019

• Made default output format loom. Provide day triplet as string or file

  

  jgould

  committed
  b89cb19

• Set index if only one annotation provided

  

  jgould

  committed
  5725e79

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