JBrowseR is an R package that provides a simple and clean interface to JBrowse 2 for R users. Using JBrowseR, you can:
- Embed the JBrowse 2 genome browser in R Markdown documents and Shiny applications
- Deploy a genome browser directly from the R console to view your data
- Customize your genome browser to display your own data
With this functionality, you can deploy a first-class genome browser with your data in just a few lines of R code!
You can install the released version of JBrowseR from CRAN with:
install.packages("JBrowseR")
And the development version from GitHub with:
# install.packages("devtools")
devtools::install_github("gmod/JBrowseR")
This line of code can be used to launch a genome browser from your R console:
library(JBrowseR)
JBrowseR("ViewHg19",
location = "10:29,838,737..29,838,819")
In order to get started with JBrowseR, please refer to the vignette that best suits your needs: