This is singularity container for HPC
OpenVessel Image container for Singularity for HPC deployment.
The image recipe is written to Singularity.OP_image and is pull into singularity hub to be pre-built for various users.
Hosted on Singularity-hub.org https://singularity-hub.org/collections/5024
To pull the image from Singularity Hub
singularity pull shub://Gresliebear/Singularity_container_HPC_OP:op_py2_image
Python 2 container
singularity pull shub://Gresliebear/Singularity_container_HPC_OP:op_image
OS - Ubuntu 18.04
Python version 3.7
List of python packages in requirements.txt
absl-py==0.9.0
appdirs==1.4.4
attrs==19.3.0
black==19.10b0
cachetools==4.1.1
certifi==2020.6.20
chardet==3.0.4
click==7.1.2
coverage==5.2.1
cycler==0.10.0
decorator==4.4.2
dill==0.3.2
filelock==3.0.12
flake8==3.8.3
flake8-bugbear==20.1.4
flake8-comprehensions==3.2.3
flake8-executable==2.0.3
flake8-polyfill==1.0.2
flake8-pyi==20.5.0
future==0.18.2
gdown==3.12.0
google-auth==1.20.1
google-auth-oauthlib==0.4.1
grpcio==1.31.0
h5py==2.10.0
idna==2.10
imageio==2.9.0
importlab==0.5.1
importlib-metadata==1.7.0
isort==5.3.2
joblib==0.16.0
kiwisolver==1.2.0
Markdown==3.2.2
matplotlib==3.3.0
mccabe==0.6.1
meshio==4.0.16
monai==0.2.0
mypy==0.782
mypy-extensions==0.4.3
networkx==2.4
nibabel==3.1.1
ninja==1.10.0.post1
numpy==1.19.1
oauthlib==3.1.0
opencv-python==4.4.0.46
packaging==20.4
pandas==1.1.0
parameterized==0.7.4
pathspec==0.8.0
pep8-naming==0.11.1
Pillow==7.2.0
plotly==4.9.0
protobuf==3.12.4
pyasn1==0.4.8
pyasn1-modules==0.2.8
pycodestyle==2.6.0
pydicom==2.0.0
pyflakes==2.2.0
pyparsing==2.4.7
PySocks==1.7.1
python-dateutil==2.8.1
pytorch-ignite==0.3.0
pytype==2020.8.10
pytz==2020.1
pyvista==0.25.3
PyWavelets==1.1.1
PyYAML==5.3.1
redis==3.5.3
regex==2020.7.14
requests==2.24.0
requests-oauthlib==1.3.0
retrying==1.3.3
rsa==4.6
scikit-image==0.17.2
scikit-learn==0.23.1
scipy==1.5.2
scooby==0.5.6
SimpleITK==2.0.1
six==1.15.0
sklearn==0.0
tensorboard==2.3.0
tensorboard-plugin-wit==1.7.0
threadpoolctl==2.1.0
tifffile==2020.7.24
toml==0.10.1
torch==1.6.0
torchvision==0.7.0
tqdm==4.48.2
typed-ast==1.4.1
typing-extensions==3.7.4.2
urllib3==1.25.10
vtk==9.0.1
Werkzeug==1.0.1
zipp==3.1.0
Nivida drivers addition - in progress