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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(print,mapa_conflicts)
S3method(translate_language,character)
S3method(translate_language,functional_module)
export(check_variable_info)
export(create_relation_network)
export(do_gsea)
export(enrich_pathway)
export(export_functional_module)
export(export_module_info_plot)
export(filter_functional_module)
export(get_go_result_sim)
export(get_jaccard_index_for_three_databases)
export(get_mapa_version)
export(identify_functional_modules)
export(identify_modules)
export(interpret_pathways)
export(mapa_conflicts)
export(mapa_logo)
export(mapa_packages)
export(merge_modules)
export(merge_pathways)
export(plot_module_info)
export(plot_pathway_bar)
export(plot_relationship_network)
export(plot_similarity_network)
export(report_functional_module)
export(request_chatgpt_response)
export(request_gemini_response)
export(set_chatgpt_api_key)
export(set_gemini_api_key)
export(translate_language)
exportClasses(functional_module)
import(ggplot2)
import(ggraph)
import(igraph)
import(openxlsx)
import(patchwork)
importClassesFrom(massdataset,tidymass_parameter)
importFrom(cli,cli_abort)
importFrom(cli,rule)
importFrom(cli,symbol)
importFrom(crayon,black)
importFrom(crayon,blue)
importFrom(crayon,col_align)
importFrom(crayon,green)
importFrom(crayon,make_style)
importFrom(crayon,num_colors)
importFrom(crayon,red)
importFrom(crayon,style)
importFrom(crayon,white)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,syms)
importFrom(extrafont,loadfonts)
importFrom(ggforce,geom_link)
importFrom(ggplot2,ggsave)
importFrom(ggwordcloud,geom_text_wordcloud)
importFrom(grid,arrow)
importFrom(httr,POST)
importFrom(httr,add_headers)
importFrom(httr,content)
importFrom(httr,content_type_json)
importFrom(igraph,bipartite_mapping)
importFrom(igraph,cluster_edge_betweenness)
importFrom(igraph,edge_attr)
importFrom(igraph,membership)
importFrom(igraph,upgrade_graph)
importFrom(igraph,vertex_attr)
importFrom(magrittr,"%>%")
importFrom(massdataset,activate_mass_dataset)
importFrom(massdataset,extract_variable_info)
importFrom(massdataset,parse_tidymass_parameter)
importFrom(methods,.hasSlot)
importFrom(methods,is)
importFrom(methods,new)
importFrom(patchwork,plot_layout)
importFrom(plyr,.)
importFrom(plyr,dlply)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,walk)
importFrom(rmarkdown,draft)
importFrom(rmarkdown,html_document)
importFrom(rmarkdown,pdf_document)
importFrom(rmarkdown,render)
importFrom(rmarkdown,word_document)
importFrom(simplifyEnrichment,GO_similarity)
importFrom(simplifyEnrichment,term_similarity_from_KEGG)
importFrom(simplifyEnrichment,term_similarity_from_Reactome)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,rgamma)
importFrom(stats,sd)
importFrom(stats,time)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_sort)
importFrom(stringr,str_split)
importFrom(stringr,str_wrap)
importFrom(tibble,add_column)
importFrom(tidygraph,activate)
importFrom(tidygraph,as_tbl_graph)
importFrom(tidygraph,centrality_degree)
importFrom(tidygraph,tbl_graph)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,packageDescription)
importFrom(utils,packageVersion)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,str)
importFrom(utils,tail)
importFrom(utils,write.csv)
importFrom(utils,write.table)