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Commits on Apr 15, 2024

• Release bwa-0.7.18 (r1243)

  lh3

  committed
  79b230d

Commits on Sep 22, 2022

• Merge pull request lh3#367 from martin-g/github-actions-linux-aarch64

  Show description for 139f68f
  lh3

  authored
  139f68f

Commits on Sep 1, 2022

• Add CI job for Ubuntu 20.04 aarch64

  Show description for 94248a8
  martin-g

  committed
  94248a8

Commits on Aug 31, 2022

• Merge pull request lh3#359 from jmarshall/neon

  Show description for 2e603e4
  lh3

  authored
  2e603e4

Commits on Jun 27, 2022

• Use native SSE2 intrinsics on i386 as well as x86-64

  Show description for c77ace7
  jmarshall

  committed
  c77ace7

Commits on Jun 26, 2022

• On other platforms, emulate SSE2 SIMD calls using scalar code

  jmarshall

  committed
  ac612b6

Commits on Jun 20, 2022

• On ARM, rewrite SSE2 SIMD calls using Neon intrinsics

  Show description for 165e524
  jmarshall

  committed
  165e524

Commits on Jun 17, 2022

• Make _mm_load_si128() explicit

  Show description for ab01ab4
  jmarshall

  committed
  ab01ab4

Commits on Jun 3, 2022

• Merge pull request lh3#355 from clintval/cv_document_new_XB

  Show description for b56db22
  lh3

  authored
  b56db22

Commits on May 19, 2022

• Document that the XB tag now contains the mapping quality too

  clintval

  committed
  2160a0c

Commits on Mar 7, 2022

• Merge pull request lh3#263 from jmarshall/std-vars

  Show description for 2d4272b
  lh3

  authored
  2d4272b

• Use $CPPFLAGS and $LDFLAGS if they are set

  Show description for ceaaa6d
  jmarshall

  committed
  ceaaa6d

Commits on Mar 6, 2022

• Merge branch 'fulcrumgenomics-feature/add-xa-drop-ratio-option'

  lh3

  committed
  8c92aef

• Merge branch 'feature/add-xa-drop-ratio-option' of https://github.com/fulcrumgenomics/bwa into fulcrumgenomics-feature/add-xa-drop-ratio-option

  lh3

  committed
  58e3ed2

• Merge pull request lh3#293 from nh13/patch-2

  Show description for 41e0078
  lh3

  authored
  41e0078

• Merge pull request lh3#292 from nh13/patch-1

  Show description for cb7e5df
  lh3

  authored
  cb7e5df

• Merge pull request lh3#297 from nh13/patch-3

  Show description for 40b3aee
  lh3

  authored
  40b3aee

• Merge pull request lh3#330 from nh13/patch-4

  Show description for 0747fcc
  lh3

  authored
  0747fcc

• Merge pull request lh3#336 from nh13/patch-5

  Show description for ef52b4a
  lh3

  authored
  ef52b4a

• Merge pull request lh3#343 from nh13/patch-7

  Show description for 760098d
  lh3

  authored
  760098d

Commits on Feb 18, 2022

• Update bwa.1

  nh13

  authored
  4bf3cdf

Commits on Dec 14, 2021

• Add the header line to the output SAM

  Show description for 6b18630
  nh13

  authored
  6b18630

Commits on Jul 21, 2021

• Add the mate mapping quality tag

  nh13

  authored
  d8dd308

Commits on May 10, 2021

• fixed wrong Markdown format in README

  lh3

  committed
  3ddd7b8

• updated to Github CI status

  lh3

  committed
  fe209ff

• Merge pull request lh3#325 from jmarshall/ci

  Show description for f033d4e
  lh3

  authored
  f033d4e

Commits on May 9, 2021

• Convert Travis CI to GitHub Actions

  Show description for 765fac1
  jmarshall

  committed
  765fac1

Commits on Apr 22, 2021

• added code of conduct

  lh3

  committed
  fbfffc9

Commits on Mar 9, 2021

• Removed the debug output; resolves lh3#320

  lh3

  committed
  34374c5

• deprecate bwasw

  lh3

  committed
  110bf9b

Commits on Feb 23, 2021

• output more memory information

  lh3

  committed
  f1d1fd7

• debug flag to measure memory

  lh3

  committed
  b9accf9

Commits on Aug 19, 2020

• Clarify bwa mem -5 option

  Show description for 84b2abb
  nh13

  authored
  84b2abb

Commits on Aug 12, 2020

• allow the user to specify the XA drop ratio via the -z option

  nh13

  committed
  50122be

• Update fastmap.c

  nh13

  authored
  ab9e0e0

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