📚 Freely available programming books

Linux工具快速教程

Data Science at the Command Line

Source Code for the book: Machine Learning in Action published by Manning

Notes and exercise attempts for "An Introduction to Statistical Learning"

《机器学习实战》的python3源码

Source code of the web interface of https://mirrors.tuna.tsinghua.edu.cn/

A website that displays hundreds of R charts with their code

Exercises answers to the book "machine-learning" written by Prof. Zhou Zhihua of Nanjing University

Clone me to create your Manubot manuscript

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

vtreat is a data frame processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner. Distributed under choice of GPL-2 or GPL-3 license.

Web application to explore the Sequence Read Archive.

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

Exploring dimension-reduced embeddings

Marker gene selection from scRNA-seq data

Learning gene-specific regulatory elements from epigenetic data

No Read Left Behind - Software for Motif Discovery from SELEX Data

Alignment of DNA shape profiles

personal github pages (under construction)