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Commits on May 6, 2021

• Merge pull request #3 from JBEI/running-notebook

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Commits on May 4, 2021

• Add Dockerfile with instructions

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• Copy Notebook with support files from paper repo

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• Update Python version to 3.8

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• Remove ignore on Pipfile.lock

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Commits on Apr 20, 2021

• added licence details to the README and the license itself to LICENSE.txt

  somtirtharoy

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• removed Affero licence from omg.py

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Commits on Nov 20, 2020

• removed obsolete jupyter notebooks and ignored the tests directory

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Commits on Sep 30, 2020

• Made changes to README.md

  somtirtharoy

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• Merge pull request #2 from JBEI/fixMetabolomics

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Commits on Sep 29, 2020

• Add LICENSE file

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Commits on Sep 28, 2020

• Fixed all zero metabolites issue

  mhgarci1

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Commits on Sep 23, 2020

• Corrected OD file and eliminated ammonium from output metabolites

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Commits on Sep 20, 2020

• Added more metabolites for upload into EDD

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Commits on Sep 19, 2020

• Modified output file writing for more flexibility

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Commits on Sep 17, 2020

• Changed the CID for isopentenol to the corrects value

  somtirtharoy

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Commits on Sep 15, 2020

• Removed line_name arg where not needed.

  tianar

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• Merge branch 'omgforallhosts' of https://github.com/JBEI/OMG into omgforallhosts

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• Changed mg/L to mM

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• Removed 'line_name' as suffix for EDD/AL files.

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Commits on Sep 9, 2020

• Changed all omics values to positive values and made sure that we have transcriptomics value for every reaction that has proteomics values

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Commits on Sep 4, 2020

• Commented on write_experiment_description_file function - it is hard coded only for WT. Corrected part ID, description, according to ice entry

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• Changed notebook code to add user parameters to define path to edd and arrowland files to get written in and modified OMG code accordingly, restructured write function in OMG

  somtirtharoy

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• Made changes to code and notebook to make the notebook more clean and easy to use

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Commits on Sep 3, 2020

• Modified notebook and OMG code to dynamically write files in EDD or Arroland format depending on parameter supplied by user

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Commits on Sep 2, 2020

• Made changes to Code to export old ids for metabolomics data for importing to Arrowland

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• added code in notebook to write out all data in output folder

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Commits on Aug 31, 2020

• Made changes in notebook and library to make user give path to the mapping file used to map inchi key to CIDs

  somtirtharoy

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• Made changes to omg to work with the jupyter notebook, added methods to check if isopentenol pathway present of not then add it. modified notebook to accomodate changes

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Commits on Aug 29, 2020

• Added restructuring as per hectors code and new notebook for running OMG library and providing data to ART

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• resolved conflicts with remote

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• Made minor formatting changes

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• Restructured OMG code accroding to Hector's modifications to the individual functions

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Commits on Aug 18, 2020

• Copy modelfile to data directory

  somtirtharoy

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• Add code inside omg to take care of copying trainng file and creating data and output folders which should not be in the notebook

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