Compare mappability tracks
conda create -n mappability-diff
conda install bioconda::ucsc-wigtobigwig python=3.10
python -m pip install -r requirements.txt
Create data directory with fasta and bigwig subdirectories.
mkdir -p data/fasta
mkdir -p data/bigwig
Move your fasta files to data/fasta before proceding
Run genmap to create mappability tracks
bash run_genmap.sh
Then assuming you have downloaded an annotation file for your genome run:
python src/mappability_diff.py data/bigwig results --gtf annotation.gtf