- Version: 1.0.2
- GitHub: https://github.com/reimandlab/ActivePathways
- Source code: https://github.com/cran/ActivePathways
- Date/Publication: 2020-07-09 17:20:02 UTC
- Number of recursive dependencies: 88
Run cloud_details(, "ActivePathways")
for more info
* using log directory ‘/tmp/workdir/ActivePathways/new/ActivePathways.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘ActivePathways/DESCRIPTION’ ... OK
* this is package ‘ActivePathways’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘ActivePathways-vignette.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 1 ERROR, 1 NOTE
* using log directory ‘/tmp/workdir/ActivePathways/old/ActivePathways.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘ActivePathways/DESCRIPTION’ ... OK
* this is package ‘ActivePathways’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘ActivePathways-vignette.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 1 ERROR, 1 NOTE
- Version: 2.0.0
- GitHub: NA
- Source code: https://github.com/cran/apc
- Date/Publication: 2020-10-01 23:20:06 UTC
- Number of recursive dependencies: 113
Run cloud_details(, "apc")
for more info
* using log directory ‘/tmp/workdir/apc/new/apc.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘apc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘apc’ version ‘2.0.0’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘ChainLadder’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/apc/old/apc.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘apc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘apc’ version ‘2.0.0’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘ChainLadder’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.3.0
- GitHub: https://github.com/dhaine/apisensr
- Source code: https://github.com/cran/apisensr
- Date/Publication: 2021-03-15 11:20:09 UTC
- Number of recursive dependencies: 128
Run cloud_details(, "apisensr")
for more info
* using log directory ‘/tmp/workdir/apisensr/new/apisensr.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘apisensr/DESCRIPTION’ ... OK
* this is package ‘apisensr’ version ‘0.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘episensr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/apisensr/old/apisensr.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘apisensr/DESCRIPTION’ ... OK
* this is package ‘apisensr’ version ‘0.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘episensr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.1.4.3
- GitHub: https://github.com/christinaheinze/backShift
- Source code: https://github.com/cran/backShift
- Date/Publication: 2020-05-06 11:30:03 UTC
- Number of recursive dependencies: 89
Run cloud_details(, "backShift")
for more info
* using log directory ‘/tmp/workdir/backShift/new/backShift.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘backShift/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘backShift’ version ‘0.1.4.3’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘exampleBackShift.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 2 NOTEs
* using log directory ‘/tmp/workdir/backShift/old/backShift.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘backShift/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘backShift’ version ‘0.1.4.3’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘exampleBackShift.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 2 NOTEs
- Version: 1.1.0
- GitHub: https://github.com/fate-ewi/bayesdfa
- Source code: https://github.com/cran/bayesdfa
- Date/Publication: 2021-05-28 18:10:05 UTC
- Number of recursive dependencies: 81
Run cloud_details(, "bayesdfa")
for more info
- checking whether package ‘bayesdfa’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details.
* installing *source* package ‘bayesdfa’ ...
** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30,
...
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stanExports_dfa.o] Error 1
ERROR: compilation failed for package ‘bayesdfa’
* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’
* installing *source* package ‘bayesdfa’ ...
** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30,
...
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stanExports_dfa.o] Error 1
ERROR: compilation failed for package ‘bayesdfa’
* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’
- Version: 0.0.2
- GitHub: NA
- Source code: https://github.com/cran/bayesZIB
- Date/Publication: 2021-05-26 09:50:02 UTC
- Number of recursive dependencies: 53
Run cloud_details(, "bayesZIB")
for more info
- checking whether package ‘bayesZIB’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/bayesZIB/new/bayesZIB.Rcheck/00install.out’ for details.
* installing *source* package ‘bayesZIB’ ...
** package ‘bayesZIB’ successfully unpacked and MD5 sums checked
** using staged installation
Error in loadNamespace(name) : there is no package called ‘rstantools’
Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: configuration failed for package ‘bayesZIB’
* removing ‘/tmp/workdir/bayesZIB/new/bayesZIB.Rcheck/bayesZIB’
* installing *source* package ‘bayesZIB’ ...
** package ‘bayesZIB’ successfully unpacked and MD5 sums checked
** using staged installation
Error in loadNamespace(name) : there is no package called ‘rstantools’
Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: configuration failed for package ‘bayesZIB’
* removing ‘/tmp/workdir/bayesZIB/old/bayesZIB.Rcheck/bayesZIB’
- Version: NA
- GitHub: NA
- Source code: https://github.com/cran/NA
- Number of recursive dependencies: 0
Run cloud_details(, "NA")
for more info
- Version: NA
- GitHub: NA
- Source code: https://github.com/cran/NA
- Number of recursive dependencies: 0
Run cloud_details(, "NA")
for more info
- Version: 1.9.13
- GitHub: https://github.com/leifeld/btergm
- Source code: https://github.com/cran/btergm
- Date/Publication: 2020-10-26 14:30:02 UTC
- Number of recursive dependencies: 75
Run cloud_details(, "btergm")
for more info
- checking whether package ‘btergm’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/btergm/new/btergm.Rcheck/00install.out’ for details.
* installing *source* package ‘btergm’ ...
** package ‘btergm’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: object ‘ergm.Cprepare’ is not exported by 'namespace:ergm'
Execution halted
ERROR: lazy loading failed for package ‘btergm’
* removing ‘/tmp/workdir/btergm/new/btergm.Rcheck/btergm’
* installing *source* package ‘btergm’ ...
** package ‘btergm’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: object ‘ergm.Cprepare’ is not exported by 'namespace:ergm'
Execution halted
ERROR: lazy loading failed for package ‘btergm’
* removing ‘/tmp/workdir/btergm/old/btergm.Rcheck/btergm’
- Version: 1.2.7
- GitHub: NA
- Source code: https://github.com/cran/CausalImpact
- Date/Publication: 2021-06-07 06:40:02 UTC
- Number of recursive dependencies: 68
Run cloud_details(, "CausalImpact")
for more info
* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
* this is package ‘CausalImpact’ version ‘1.2.7’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'bsts', 'Boom'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
* this is package ‘CausalImpact’ version ‘1.2.7’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'bsts', 'Boom'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 1.3.4
- GitHub: NA
- Source code: https://github.com/cran/CB2
- Date/Publication: 2020-07-24 09:42:24 UTC
- Number of recursive dependencies: 100
Run cloud_details(, "CB2")
for more info
* using log directory ‘/tmp/workdir/CB2/new/CB2.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘CB2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CB2’ version ‘1.3.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘metap’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/CB2/old/CB2.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘CB2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CB2’ version ‘1.3.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘metap’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.1.3
- GitHub: https://github.com/zedoul/cbar
- Source code: https://github.com/cran/cbar
- Date/Publication: 2017-10-24 13:20:22 UTC
- Number of recursive dependencies: 63
Run cloud_details(, "cbar")
for more info
* using log directory ‘/tmp/workdir/cbar/new/cbar.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘cbar/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cbar’ version ‘0.1.3’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'Boom', 'bsts'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/cbar/old/cbar.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘cbar/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cbar’ version ‘0.1.3’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'Boom', 'bsts'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: NA
- GitHub: NA
- Source code: https://github.com/cran/NA
- Number of recursive dependencies: 0
Run cloud_details(, "NA")
for more info
- Version: 3.5.1
- GitHub: https://github.com/artemis-toumazi/dfpk
- Source code: https://github.com/cran/dfpk
- Date/Publication: 2018-11-09 15:20:06 UTC
- Number of recursive dependencies: 55
Run cloud_details(, "dfpk")
for more info
- checking whether package ‘dfpk’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/dfpk/new/dfpk.Rcheck/00install.out’ for details.
* installing *source* package ‘dfpk’ ...
** package ‘dfpk’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Modules.cpp -o Modules.o
In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
...
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_reg_auc_namespace::model_reg_auc; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:181: Modules.o] Error 1
ERROR: compilation failed for package ‘dfpk’
* removing ‘/tmp/workdir/dfpk/new/dfpk.Rcheck/dfpk’
* installing *source* package ‘dfpk’ ...
** package ‘dfpk’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Modules.cpp -o Modules.o
In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
...
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_reg_auc_namespace::model_reg_auc; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:181: Modules.o] Error 1
ERROR: compilation failed for package ‘dfpk’
* removing ‘/tmp/workdir/dfpk/old/dfpk.Rcheck/dfpk’
- Version: 1.0.4
- GitHub: https://github.com/AlineTalhouk/diceR
- Source code: https://github.com/cran/diceR
- Date/Publication: 2021-06-04 08:30:02 UTC
- Number of recursive dependencies: 146
Run cloud_details(, "diceR")
for more info
* using log directory ‘/tmp/workdir/diceR/new/diceR.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘diceR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘diceR’ version ‘1.0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘NMF’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/diceR/old/diceR.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘diceR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘diceR’ version ‘1.0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘NMF’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/GenHMM1d
- Date/Publication: 2021-01-21 08:20:03 UTC
- Number of recursive dependencies: 78
Run cloud_details(, "GenHMM1d")
for more info
* using log directory ‘/tmp/workdir/GenHMM1d/new/GenHMM1d.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘GenHMM1d/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GenHMM1d’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'actuar', 'ssdtools'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/GenHMM1d/old/GenHMM1d.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘GenHMM1d/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GenHMM1d’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'actuar', 'ssdtools'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.0.6
- GitHub: NA
- Source code: https://github.com/cran/ggmsa
- Date/Publication: 2021-02-02 10:10:07 UTC
- Number of recursive dependencies: 74
Run cloud_details(, "ggmsa")
for more info
* using log directory ‘/tmp/workdir/ggmsa/new/ggmsa.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘ggmsa/DESCRIPTION’ ... OK
* this is package ‘ggmsa’ version ‘0.0.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘Biostrings’
Packages suggested but not available for checking: 'ggtree', 'seqmagick'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/ggmsa/old/ggmsa.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘ggmsa/DESCRIPTION’ ... OK
* this is package ‘ggmsa’ version ‘0.0.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘Biostrings’
Packages suggested but not available for checking: 'ggtree', 'seqmagick'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 3.3.0
- GitHub: NA
- Source code: https://github.com/cran/ggtern
- Date/Publication: 2020-04-11 14:50:05 UTC
- Number of recursive dependencies: 45
Run cloud_details(, "ggtern")
for more info
-
checking whether package ‘ggtern’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details.
-
checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘sp’
* installing *source* package ‘ggtern’ ...
** package ‘ggtern’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'try_require' not found
Error: unable to load R code in package ‘ggtern’
Execution halted
ERROR: lazy loading failed for package ‘ggtern’
* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’
* installing *source* package ‘ggtern’ ...
** package ‘ggtern’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'try_require' not found
Error: unable to load R code in package ‘ggtern’
Execution halted
ERROR: lazy loading failed for package ‘ggtern’
* removing ‘/tmp/workdir/ggtern/old/ggtern.Rcheck/ggtern’
- Version: 0.1.4
- GitHub: https://github.com/seananderson/glmmfields
- Source code: https://github.com/cran/glmmfields
- Date/Publication: 2020-07-09 05:50:03 UTC
- Number of recursive dependencies: 95
Run cloud_details(, "glmmfields")
for more info
- checking whether package ‘glmmfields’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/glmmfields/new/glmmfields.Rcheck/00install.out’ for details.
* installing *source* package ‘glmmfields’ ...
** package ‘glmmfields’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/glmmfields.stan
Wrote C++ file "stan_files/glmmfields.cc"
g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -fpic -g -O2 -c stan_files/glmmfields.cc -o stan_files/glmmfields.o
In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
...
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_glmmfields_namespace::model_glmmfields; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/glmmfields.o] Error 1
rm stan_files/glmmfields.cc
ERROR: compilation failed for package ‘glmmfields’
* removing ‘/tmp/workdir/glmmfields/new/glmmfields.Rcheck/glmmfields’
* installing *source* package ‘glmmfields’ ...
** package ‘glmmfields’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/glmmfields.stan
Wrote C++ file "stan_files/glmmfields.cc"
g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -fpic -g -O2 -c stan_files/glmmfields.cc -o stan_files/glmmfields.o
In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
...
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_glmmfields_namespace::model_glmmfields; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/glmmfields.o] Error 1
rm stan_files/glmmfields.cc
ERROR: compilation failed for package ‘glmmfields’
* removing ‘/tmp/workdir/glmmfields/old/glmmfields.Rcheck/glmmfields’
- Version: NA
- GitHub: NA
- Source code: https://github.com/cran/NA
- Number of recursive dependencies: 0
Run cloud_details(, "NA")
for more info
- Version: 0.4
- GitHub: NA
- Source code: https://github.com/cran/mcmcabn
- Date/Publication: 2021-06-02 06:10:01 UTC
- Number of recursive dependencies: 132
Run cloud_details(, "mcmcabn")
for more info
* using log directory ‘/tmp/workdir/mcmcabn/new/mcmcabn.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘mcmcabn/DESCRIPTION’ ... OK
* this is package ‘mcmcabn’ version ‘0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'gRbase', 'abn'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/mcmcabn/old/mcmcabn.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘mcmcabn/DESCRIPTION’ ... OK
* this is package ‘mcmcabn’ version ‘0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'gRbase', 'abn'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: NA
- GitHub: NA
- Source code: https://github.com/cran/NA
- Number of recursive dependencies: 0
Run cloud_details(, "NA")
for more info
- Version: 0.2.0
- GitHub: https://github.com/Lifebrain/metagam
- Source code: https://github.com/cran/metagam
- Date/Publication: 2020-11-12 08:10:02 UTC
- Number of recursive dependencies: 145
Run cloud_details(, "metagam")
for more info
* using log directory ‘/tmp/workdir/metagam/new/metagam.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘metagam/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metagam’ version ‘0.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘metap’
Package suggested but not available for checking: ‘multtest’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/metagam/old/metagam.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘metagam/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metagam’ version ‘0.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘metap’
Package suggested but not available for checking: ‘multtest’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/MoMPCA
- Date/Publication: 2021-01-21 13:10:03 UTC
- Number of recursive dependencies: 82
Run cloud_details(, "MoMPCA")
for more info
* using log directory ‘/tmp/workdir/MoMPCA/old/MoMPCA.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘MoMPCA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MoMPCA’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
...
Error: package or namespace load failed for ‘utils’:
.onLoad failed in loadNamespace() for 'utils', details:
call: system("uname -a", intern = TRUE)
error: cannot popen 'uname -a', probable reason 'Cannot allocate memory'
internal error -3 in R_decompress1
3: package ‘stats’ in options("defaultPackages") was not found
Killed
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
- Version: 0.3.3
- GitHub: https://github.com/ropensci/osmplotr
- Source code: https://github.com/cran/osmplotr
- Date/Publication: 2021-03-28 00:10:03 UTC
- Number of recursive dependencies: 94
Run cloud_details(, "osmplotr")
for more info
* using log directory ‘/tmp/workdir/osmplotr/new/osmplotr.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘osmplotr/DESCRIPTION’ ... OK
* this is package ‘osmplotr’ version ‘0.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘ggm’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/osmplotr/old/osmplotr.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘osmplotr/DESCRIPTION’ ... OK
* this is package ‘osmplotr’ version ‘0.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘ggm’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 2.7-3
- GitHub: NA
- Source code: https://github.com/cran/pcalg
- Date/Publication: 2021-06-01 08:30:02 UTC
- Number of recursive dependencies: 60
Run cloud_details(, "pcalg")
for more info
* using log directory ‘/tmp/workdir/pcalg/new/pcalg.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘pcalg/DESCRIPTION’ ... OK
* this is package ‘pcalg’ version ‘2.7-3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'graph', 'RBGL', 'ggm'
Package suggested but not available for checking: ‘Rgraphviz’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/pcalg/old/pcalg.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘pcalg/DESCRIPTION’ ... OK
* this is package ‘pcalg’ version ‘2.7-3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'graph', 'RBGL', 'ggm'
Package suggested but not available for checking: ‘Rgraphviz’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 2020.5.13
- GitHub: https://github.com/tdhock/penaltyLearning
- Source code: https://github.com/cran/penaltyLearning
- Date/Publication: 2020-05-14 16:20:02 UTC
- Number of recursive dependencies: 60
Run cloud_details(, "penaltyLearning")
for more info
* using log directory ‘/tmp/workdir/penaltyLearning/new/penaltyLearning.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘penaltyLearning/DESCRIPTION’ ... OK
* this is package ‘penaltyLearning’ version ‘2020.5.13’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘jointseg’
...
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/penaltyLearning/old/penaltyLearning.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘penaltyLearning/DESCRIPTION’ ... OK
* this is package ‘penaltyLearning’ version ‘2020.5.13’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘jointseg’
...
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* DONE
Status: 1 NOTE
- Version: 1.1.2
- GitHub: https://github.com/Ax3man/phylopath
- Source code: https://github.com/cran/phylopath
- Date/Publication: 2019-12-07 01:10:07 UTC
- Number of recursive dependencies: 90
Run cloud_details(, "phylopath")
for more info
* using log directory ‘/tmp/workdir/phylopath/new/phylopath.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘phylopath/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘phylopath’ version ‘1.1.2’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘ggm’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/phylopath/old/phylopath.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘phylopath/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘phylopath’ version ‘1.1.2’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘ggm’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: NA
- GitHub: NA
- Source code: https://github.com/cran/NA
- Number of recursive dependencies: 0
Run cloud_details(, "NA")
for more info
- Version: 0.1.5
- GitHub: NA
- Source code: https://github.com/cran/rabhit
- Date/Publication: 2020-07-11 22:40:02 UTC
- Number of recursive dependencies: 123
Run cloud_details(, "rabhit")
for more info
* using log directory ‘/tmp/workdir/rabhit/new/rabhit.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘rabhit/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rabhit’ version ‘0.1.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'alakazam', 'tigger'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/rabhit/old/rabhit.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘rabhit/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rabhit’ version ‘0.1.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'alakazam', 'tigger'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.1.8
- GitHub: NA
- Source code: https://github.com/cran/raw
- Date/Publication: 2021-02-05 15:40:03 UTC
- Number of recursive dependencies: 160
Run cloud_details(, "raw")
for more info
* using log directory ‘/tmp/workdir/raw/new/raw.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘raw/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘raw’ version ‘0.1.8’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘raw.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/raw/old/raw.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘raw/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘raw’ version ‘0.1.8’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘raw.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 1 NOTE
- Version: 1.0.3
- GitHub: https://github.com/biostatistics4socialimpact/rstap
- Source code: https://github.com/cran/rstap
- Date/Publication: 2019-02-06 20:30:03 UTC
- Number of recursive dependencies: 110
Run cloud_details(, "rstap")
for more info
- checking whether package ‘rstap’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/rstap/new/rstap.Rcheck/00install.out’ for details.
* installing *source* package ‘rstap’ ...
** package ‘rstap’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/stap_binomial.stan
Wrote C++ file "stan_files/stap_binomial.cc"
g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"`"/opt/R/4.0.3/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c stan_files/stap_binomial.cc -o stan_files/stap_binomial.o
In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
...
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_stap_binomial_namespace::model_stap_binomial; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/stap_binomial.o] Error 1
rm stan_files/stap_binomial.cc
ERROR: compilation failed for package ‘rstap’
* removing ‘/tmp/workdir/rstap/new/rstap.Rcheck/rstap’
* installing *source* package ‘rstap’ ...
** package ‘rstap’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/stap_binomial.stan
Wrote C++ file "stan_files/stap_binomial.cc"
g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"`"/opt/R/4.0.3/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c stan_files/stap_binomial.cc -o stan_files/stap_binomial.o
In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
...
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_stap_binomial_namespace::model_stap_binomial; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/stap_binomial.o] Error 1
rm stan_files/stap_binomial.cc
ERROR: compilation failed for package ‘rstap’
* removing ‘/tmp/workdir/rstap/old/rstap.Rcheck/rstap’
- Version: 1.1.0
- GitHub: NA
- Source code: https://github.com/cran/scoper
- Date/Publication: 2020-08-10 21:50:02 UTC
- Number of recursive dependencies: 115
Run cloud_details(, "scoper")
for more info
* using log directory ‘/tmp/workdir/scoper/new/scoper.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘scoper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘scoper’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'alakazam', 'shazam'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/scoper/old/scoper.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘scoper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘scoper’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'alakazam', 'shazam'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 3.12.0
- GitHub: NA
- Source code: https://github.com/cran/spectralAnalysis
- Date/Publication: 2018-06-12 14:30:39 UTC
- Number of recursive dependencies: 104
Run cloud_details(, "spectralAnalysis")
for more info
* using log directory ‘/tmp/workdir/spectralAnalysis/new/spectralAnalysis.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘spectralAnalysis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘spectralAnalysis’ version ‘3.12.0’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'BiocGenerics', 'NMF', 'hNMF'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/spectralAnalysis/old/spectralAnalysis.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘spectralAnalysis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘spectralAnalysis’ version ‘3.12.0’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'BiocGenerics', 'NMF', 'hNMF'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: NA
- GitHub: NA
- Source code: https://github.com/cran/NA
- Number of recursive dependencies: 0
Run cloud_details(, "NA")
for more info
- Version: 0.1.0
- GitHub: https://github.com/MYaseen208/StroupGLMM
- Source code: https://github.com/cran/StroupGLMM
- Date/Publication: 2016-04-19 01:00:56
- Number of recursive dependencies: 108
Run cloud_details(, "StroupGLMM")
for more info
* using log directory ‘/tmp/workdir/StroupGLMM/new/StroupGLMM.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘StroupGLMM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘StroupGLMM’ version ‘0.1.0’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘mutoss’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/StroupGLMM/old/StroupGLMM.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘StroupGLMM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘StroupGLMM’ version ‘0.1.0’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘mutoss’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.9.7.5
- GitHub: https://github.com/dcousin3/superb
- Source code: https://github.com/cran/superb
- Date/Publication: 2021-06-23 04:10:02 UTC
- Number of recursive dependencies: 159
Run cloud_details(, "superb")
for more info
* using log directory ‘/tmp/workdir/superb/new/superb.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘superb/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘superb’ version ‘0.9.7.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘referenceIntervals’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/superb/old/superb.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘superb/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘superb’ version ‘0.9.7.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘referenceIntervals’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 1.0.0
- GitHub: https://github.com/agi-lab/SynthETIC
- Source code: https://github.com/cran/SynthETIC
- Date/Publication: 2021-04-02 12:10:02 UTC
- Number of recursive dependencies: 106
Run cloud_details(, "SynthETIC")
for more info
* using log directory ‘/tmp/workdir/SynthETIC/new/SynthETIC.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘SynthETIC/DESCRIPTION’ ... OK
* this is package ‘SynthETIC’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘SynthETIC-demo.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/SynthETIC/old/SynthETIC.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘SynthETIC/DESCRIPTION’ ... OK
* this is package ‘SynthETIC’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘SynthETIC-demo.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 1 NOTE
- Version: NA
- GitHub: NA
- Source code: https://github.com/cran/NA
- Number of recursive dependencies: 0
Run cloud_details(, "NA")
for more info
- Version: 1.0.0
- GitHub: NA
- Source code: https://github.com/cran/tigger
- Date/Publication: 2020-05-13 05:10:03 UTC
- Number of recursive dependencies: 116
Run cloud_details(, "tigger")
for more info
* using log directory ‘/tmp/workdir/tigger/new/tigger.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘tigger/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tigger’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'alakazam', 'shazam'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/tigger/old/tigger.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘tigger/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tigger’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'alakazam', 'shazam'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.10.7
- GitHub: NA
- Source code: https://github.com/cran/trackr
- Date/Publication: 2021-05-24 14:50:02 UTC
- Number of recursive dependencies: 99
Run cloud_details(, "trackr")
for more info
* using log directory ‘/tmp/workdir/trackr/new/trackr.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘trackr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘trackr’ version ‘0.10.7’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available:
'histry', 'CodeDepends', 'rsolr', 'roprov'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/trackr/old/trackr.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘trackr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘trackr’ version ‘0.10.7’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available:
'histry', 'CodeDepends', 'rsolr', 'roprov'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
- Version: 0.1-0
- GitHub: NA
- Source code: https://github.com/cran/valse
- Date/Publication: 2021-05-31 08:00:02 UTC
- Number of recursive dependencies: 54
Run cloud_details(, "valse")
for more info
- checking whether package ‘valse’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/valse/new/valse.Rcheck/00install.out’ for details.
* installing *source* package ‘valse’ ...
** package ‘valse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o
Error in loadNamespace(name) : there is no package called ‘RcppGSL’
...
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so':
/tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_vector_free
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/workdir/valse/new/valse.Rcheck/valse’
* installing *source* package ‘valse’ ...
** package ‘valse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o
gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o
Error in loadNamespace(name) : there is no package called ‘RcppGSL’
...
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so':
/tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_vector_free
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/workdir/valse/old/valse.Rcheck/valse’
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/vivid
- Date/Publication: 2021-04-09 09:10:02 UTC
- Number of recursive dependencies: 205
Run cloud_details(, "vivid")
for more info
* using log directory ‘/tmp/workdir/vivid/new/vivid.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘vivid/DESCRIPTION’ ... OK
* this is package ‘vivid’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘vivid.Rmd’ using ‘UTF-8’... OK
‘vividQStart.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 1 ERROR, 2 NOTEs
* using log directory ‘/tmp/workdir/vivid/old/vivid.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘vivid/DESCRIPTION’ ... OK
* this is package ‘vivid’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘vivid.Rmd’ using ‘UTF-8’... OK
‘vividQStart.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... SKIPPED
* DONE
Status: 1 ERROR, 2 NOTEs
- Version: 1.1.1
- GitHub: https://github.com/krlmlr/wrswoR
- Source code: https://github.com/cran/wrswoR
- Date/Publication: 2020-07-26 18:20:02 UTC
- Number of recursive dependencies: 133
Run cloud_details(, "wrswoR")
for more info
* using log directory ‘/tmp/workdir/wrswoR/new/wrswoR.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘wrswoR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘wrswoR’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/wrswoR/old/wrswoR.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘wrswoR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘wrswoR’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* DONE
Status: 1 NOTE
- Version: 1.0.3
- GitHub: https://github.com/great-northern-diver/zenplots
- Source code: https://github.com/cran/zenplots
- Date/Publication: 2020-11-28 18:10:03 UTC
- Number of recursive dependencies: 99
Run cloud_details(, "zenplots")
for more info
* using log directory ‘/tmp/workdir/zenplots/new/zenplots.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘zenplots/DESCRIPTION’ ... OK
* this is package ‘zenplots’ version ‘1.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'loon', 'graph', 'PairViz'
Package suggested but not available for checking: ‘Rgraphviz’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/zenplots/old/zenplots.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘zenplots/DESCRIPTION’ ... OK
* this is package ‘zenplots’ version ‘1.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'loon', 'graph', 'PairViz'
Package suggested but not available for checking: ‘Rgraphviz’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR