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error when trying to model transmission with SNPs distance matrix and dates information #3

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otzfadia opened this issue Nov 28, 2019 · 1 comment
Open

error when trying to model transmission with SNPs distance matrix and dates information #3

otzfadia opened this issue Nov 28, 2019 · 1 comment

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@otzfadia
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Heya,
I am getting an error when trying to model transmission with SNPs distance matrix and dates information. I try the following:

> bcModel <- createModel()
> fileName <- "IDsDates.csv"
> bcModel <- setDatesFromFile(bcModel, fileName)
  [1] 1991A06828 1992A08873 1992A08871 1992A08806 1993A09409 1994A00108 1994A00106 1998A01064
  [9] 2001A00098 2002A00589 2004A02588 2004A02550 2004A02549 2004A02546 2004A02525 2004A02514
 [17] 2004A02233 2004A02230 2004A02170 2004A02160 2004A02070 2004A02050 2004A01924 2004A01916
 [25] 2005A02589 2005A02320 2005A02319 2005A02318 2005A02317 2005A01800 2005A01797 2005A01796
 [33] 2005A01780 2005A01714 2005A01712 2005A01697 2005A01264 2005A01263 2005A01185 2005A01162
 [41] 2005A01160 2005A01132 2005A01128 2005A01122 2005A01117 2005A01102 2005A00892 2005A00869
 [49] 2005A00518 2005A00505 2005A00472 2005A00383 2005A00382 2005A00362 2005A00323 2005A00238
 [57] 2005A00195 2005A00152 2005A00143 2005A00139 2006A03615 2006A03613 2006A03608 2006A02709
 [65] 2006A02708 2006A02705 2006A02691 2006A02690 2006A02687 2006A01680 2006A01676 2006A01675
 [73] 2006A01672 2006A01666 2006A01660 2006A01656 2006A01654 2006A01423 2006A01111 2006A01110
 [81] 2006A01109 2006A01101 2006A01099 2006A01094 2006A01093 2007A03669 2007A01933 2007A01521
 [89] 2005A02322 2005A02321 2006A03612 2006A01665 2006A01424 2006A02688 2006A02703 2006A01678
 [97] 2007A01520 2006A01422 2006A01419 2007A00176 2006A01661 2006A01664 2006A01670 2006A01418
[105] 2006A01667 2006A01671 2006A02692 2006A02696 2006A02700 2006A02699 2006A02704 2006A02702
[113] 2006A02706 2006A02710 2006A03606 2006A03607 2006A03614 2006A01421 2006A03616 2006A03617
[121] 2006A01663 2007A01519 2007A00172 2007A00173 2007A00177 2007A00168 2007A01518 2007A00167
[129] 2007A00164 2007A01517 2007A01522 2007A01516 2007A03670 2007A01514 2010A02638 2008A04387
[137] 2010A02817 2010A02639 2010A00507 2018A00793 2008A04386 2018A00725 2018A00796 2018A00747
[145] 2018A00795 2018A00803 2018A00802 2018A00730 2018A00706 2018A00785 2018A00838 2018A00789
[153] 2018A00701 2018A00707 2018A00733 2018A00722 2018A00692 2018A00702 2018A00737 2018A00763
[161] 2018A00828 2018A00693 2018A00741 2018A00755 2018A00743 2018A00768 2018A00740 2018A00682
[169] 2018A00719 2018A00814 2018A00809 2018A00805 2018A00684 2018A00794 2018A00765 2018A00683
[177] 2018A00715 2018A00778 2018A00767 2018A00834 2018A00723 2018A00681 2018A00675 2018A00771
[185] 2018A00775 2018A00832 2018A00712 2018A00801 2018A00787 2018A00790 2018A00779 2018A00783
[193] 2018A00717 2018A00751 2018A00782 2018A00676 2018A00695 2018A00697 2018A00688 2018A00753
[201] 2018A00679 2018A01117 2018A01119 2018A01220 2018A00750 2018A01213 2018A01177 2018A01111
[209] 2018A00685 2018A00677 2018A01224 2018A01185 2018A01109 2018A00694 2018A01152 2018A01193
[217] 2018A01228 2018A01091 2018A01131 2018A01155 2018A01216 2018A01218 2018A01123 2018A01208
[225] 2018A01095 2018A01104 2018A01105 2018A01102 2018A01100 2018A01163
230 Levels: 1991A06828 1992A08806 1992A08871 1992A08873 1993A09409 1994A00106 ... 2018A01228
> 
> fileName <-"pairwise_distances_dates.csv"
> bcModel <- setSNPFromFile(bcModel, fileName)
> 
> bcModel
$id
  [1] "1991A06828" "1992A08873" "1992A08871" "1992A08806" "1993A09409" "1994A00108" "1994A00106"
  [8] "1998A01064" "2001A00098" "2002A00589" "2004A02588" "2004A02550" "2004A02549" "2004A02546"
 [15] "2004A02525" "2004A02514" "2004A02233" "2004A02230" "2004A02170" "2004A02160" "2004A02070"
 [22] "2004A02050" "2004A01924" "2004A01916" "2005A02589" "2005A02320" "2005A02319" "2005A02318"
 [29] "2005A02317" "2005A01800" "2005A01797" "2005A01796" "2005A01780" "2005A01714" "2005A01712"
 [36] "2005A01697" "2005A01264" "2005A01263" "2005A01185" "2005A01162" "2005A01160" "2005A01132"
 [43] "2005A01128" "2005A01122" "2005A01117" "2005A01102" "2005A00892" "2005A00869" "2005A00518"
 [50] "2005A00505" "2005A00472" "2005A00383" "2005A00382" "2005A00362" "2005A00323" "2005A00238"
 [57] "2005A00195" "2005A00152" "2005A00143" "2005A00139" "2006A03615" "2006A03613" "2006A03608"
 [64] "2006A02709" "2006A02708" "2006A02705" "2006A02691" "2006A02690" "2006A02687" "2006A01680"
 [71] "2006A01676" "2006A01675" "2006A01672" "2006A01666" "2006A01660" "2006A01656" "2006A01654"
 [78] "2006A01423" "2006A01111" "2006A01110" "2006A01109" "2006A01101" "2006A01099" "2006A01094"
 [85] "2006A01093" "2007A03669" "2007A01933" "2007A01521" "2005A02322" "2005A02321" "2006A03612"
 [92] "2006A01665" "2006A01424" "2006A02688" "2006A02703" "2006A01678" "2007A01520" "2006A01422"
 [99] "2006A01419" "2007A00176" "2006A01661" "2006A01664" "2006A01670" "2006A01418" "2006A01667"
[106] "2006A01671" "2006A02692" "2006A02696" "2006A02700" "2006A02699" "2006A02704" "2006A02702"
[113] "2006A02706" "2006A02710" "2006A03606" "2006A03607" "2006A03614" "2006A01421" "2006A03616"
[120] "2006A03617" "2006A01663" "2007A01519" "2007A00172" "2007A00173" "2007A00177" "2007A00168"
[127] "2007A01518" "2007A00167" "2007A00164" "2007A01517" "2007A01522" "2007A01516" "2007A03670"
[134] "2007A01514" "2010A02638" "2008A04387" "2010A02817" "2010A02639" "2010A00507" "2018A00793"
[141] "2008A04386" "2018A00725" "2018A00796" "2018A00747" "2018A00795" "2018A00803" "2018A00802"
[148] "2018A00730" "2018A00706" "2018A00785" "2018A00838" "2018A00789" "2018A00701" "2018A00707"
[155] "2018A00733" "2018A00722" "2018A00692" "2018A00702" "2018A00737" "2018A00763" "2018A00828"
[162] "2018A00693" "2018A00741" "2018A00755" "2018A00743" "2018A00768" "2018A00740" "2018A00682"
[169] "2018A00719" "2018A00814" "2018A00809" "2018A00805" "2018A00684" "2018A00794" "2018A00765"
[176] "2018A00683" "2018A00715" "2018A00778" "2018A00767" "2018A00834" "2018A00723" "2018A00681"
[183] "2018A00675" "2018A00771" "2018A00775" "2018A00832" "2018A00712" "2018A00801" "2018A00787"
[190] "2018A00790" "2018A00779" "2018A00783" "2018A00717" "2018A00751" "2018A00782" "2018A00676"
[197] "2018A00695" "2018A00697" "2018A00688" "2018A00753" "2018A00679" "2018A01117" "2018A01119"
[204] "2018A01220" "2018A00750" "2018A01213" "2018A01177" "2018A01111" "2018A00685" "2018A00677"
[211] "2018A01224" "2018A01185" "2018A01109" "2018A00694" "2018A01152" "2018A01193" "2018A01228"
[218] "2018A01091" "2018A01131" "2018A01155" "2018A01216" "2018A01218" "2018A01123" "2018A01208"
[225] "2018A01095" "2018A01104" "2018A01105" "2018A01102" "2018A01100" "2018A01163"

$date
  [1] "1991"       "1992"       "1992"       "1992"       "1993"       "1994"       "1994"      
  [8] "1998"       "2001"       "2002"       "2004"       "2004"       "2004"       "2004"      
 [15] "2004"       "2004"       "2004"       "2004"       "2004"       "2004"       "2004"      
 [22] "2004"       "2004"       "2004"       "2005"       "2005"       "2005"       "2005"      
 [29] "2005"       "2005"       "2005"       "2005"       "2005"       "2005"       "2005"      
 [36] "2005"       "2005"       "2005"       "2005"       "2005"       "2005"       "2005"      
 [43] "2005"       "2005"       "2005"       "2005"       "2005"       "2005"       "2005"      
 [50] "2005"       "2005"       "2005"       "2005"       "2005"       "2005"       "2005"      
 [57] "2005"       "2005"       "2005"       "2005"       "2006"       "2006"       "2006"      
 [64] "2006"       "2006"       "2006"       "2006"       "2006"       "2006"       "2006"      
 [71] "2006"       "2006"       "2006"       "2006"       "2006"       "2006"       "2006"      
 [78] "2006"       "2006"       "2006"       "2006"       "2006"       "2006"       "2006"      
 [85] "2006"       "2007"       "2007"       "2007"       "2005.09.15" "2005.11.07" "2005.11.18"
 [92] "2006.01.01" "2006.01.01" "2006.02.02" "2006.03.10" "2006.03.10" "2006.03.20" "2006.03.20"
 [99] "2006.03.30" "2006.04.19" "2006.04.27" "2006.05.09" "2006.05.15" "2006.05.15" "2006.05.16"
[106] "2006.05.25" "2006.06.23" "2006.06.24" "2006.07.20" "2006.07.20" "2006.07.25" "2006.07.27"
[113] "2006.08.03" "2006.08.04" "2006.08.10" "2006.08.14" "2006.09.06" "2006.09.10" "2006.09.14"
[120] "2006.09.19" "2006.09.28" "2006.10.13" "2006.11.02" "2006.11.15" "2006.11.29" "2006.12.14"
[127] "2006.12.21" "2006.12.21" "2007.01.01" "2007.01.05" "2007.01.25" "2007.02.05" "2007.02.21"
[134] "2007.03.02" "2008.07.30" "2008.08.05" "2009.04.21" "2009.06.10" "2009.06.20" "2012.11.20"
[141] "2013.05.15" "2013.08.27" "2013.10.21" "2013.10.24" "2013.12.05" "2014.01.05" "2014.01.12"
[148] "2014.01.27" "2014.04.08" "2014.05.15" "2014.08.04" "2014.10.01" "2014.12.24" "2015.01.12"
[155] "2015.02.11" "2015.02.11" "2015.02.23" "2015.02.27" "2015.03.11" "2015.03.17" "2015.03.23"
[162] "2015.05.04" "2015.06.22" "2015.06.30" "2015.08.11" "2015.09.16" "2015.09.29" "2015.09.29"
[169] "2015.09.30" "2015.12.08" "2015.12.08" "2015.12.08" "2015.12.08" "2016.01.27" "2016.03.09"
[176] "2016.03.12" "2016.03.16" "2016.04.04" "2016.04.30" "2016.05.12" "2016.05.26" "2016.07.10"
[183] "2016.07.24" "2016.07.25" "2016.08.09" "2016.08.14" "2016.09.06" "2016.09.19" "2016.10.14"
[190] "2016.10.27" "2016.11.11" "2016.11.19" "2016.11.25" "2016.12.08" "2016.12.15" "2017.01.03"
[197] "2017.01.20" "2017.02.21" "2017.03.14" "2017.03.20" "2017.04.05" "2017.04.24" "2017.05.08"
[204] "2017.05.09" "2017.05.11" "2017.05.19" "2017.05.20" "2017.05.25" "2017.05.25" "2017.06.05"
[211] "2017.06.07" "2017.06.15" "2017.06.15" "2017.06.30" "2017.07.21" "2017.09.13" "2017.09.19"
[218] "2017.09.22" "2017.09.28" "2017.09.29" "2017.10.05" "2017.10.26" "2017.11.03" "2017.11.23"
[225] "2018.01.03" "2018.01.09" "2018.01.11" "2018.01.16" "2018.01.20" "2018.02.17"

$snp
       X            X1991A06828 X1991A07346 X1991A07602 X1992A07856 X1992A08171 X1992A08251
  [1,] "1991A06828" "  0"       "281"       "266"       "276"       "284"       "197"      
  [2,] "1991A07346" "281"       "  0"       "129"       "143"       "147"       "248"      
       X1992A08341 X1992A08401 X1992A08402 X1992A08561 X1992A08602 X1992A08639 X1992A08640
  [1,] "199"       "272"       "206"       "477"       "209"       "268"       "268"      
  [2,] "252"       "137"       "259"       "442"       "258"       "131"       "131"      
       X1992A08654 X1992A08765 X1992A08766 X1992A08806 X1992A08871 X1992A08872 X1992A08873
  [1,] "270"       "278"       "503"       "  3"       "  3"       "286"       "  3"      
  [2,] "133"       "141"       "468"       "280"       "280"       "151"       "280"      
       X1992A08893 X1993A08941 X1993A09006 X1993A09039 X1993A09161 X1993A09163 X1993A09164
  [1,] "488"       "482"       "203"       "267"       "211"       "281"       "273"      
  [2,] "453"       "447"       "254"       "128"       "266"       "144"       "136"      
       X1993A09347 X1993A09409 X1993A09486 X1993A09582 X1993A09751 X1994A00039 X1994A00106
  [1,] "274"       "  5"       "281"       "281"       "288"       "199"       "  4"      
  [2,] "137"       "282"       "144"       "144"       "153"       "250"       "281"      
       X1994A00107 X1994A00108 X1998A01064 X1998A01091 X1998A01092 X2001A00098 X2002A00589
  [1,] "  6"       "  5"       "  6"       "932"       "932"       "  7"       "  4"      
  [2,] "283"       "282"       "283"       "897"       "897"       "284"       "281"      
       X2004A01916 X2004A01921 X2004A01924 X2004A02050 X2004A02070 X2004A02102 X2004A02154
  [1,] "  9"       "269"       "  7"       "  5"       "  6"       "268"       "271"      
  [2,] "286"       "132"       "284"       "282"       "283"       "129"       "136"      
       X2004A02155 X2004A02160 X2004A02170 X2004A02230 X2004A02233 X2004A02241 X2004A02262
  [1,] "271"       " 10"       "  8"       "  8"       "  8"       "276"       "273"      
  [2,] "136"       "287"       "285"       "285"       "285"       "141"       "138"      
       X2004A02272 X2004A02278 X2004A02279 X2004A02290 X2004A02514 X2004A02523 X2004A02525
  [1,] "275"       "270"       "193"       "268"       "  7"       "491"       "  7"      
  [2,] "144"       "135"       "244"       "133"       "284"       "456"       "284"      
       X2004A02530 X2004A02534 X2004A02536 X2004A02537 X2004A02543 X2004A02546 X2004A02549
  [1,] "265"       "265"       "269"       "272"       "268"       "  6"       "  9"      
  [2,] "128"       "130"       "132"       "135"       "129"       "283"       "286"      
       X2004A02550 X2004A02559 X2004A02562 X2004A02587 X2004A02588 X2004A02591 X2005A00139
  [1,] "  8"       "271"       "256"       "271"       "  7"       "269"       "  7"      
  [2,] "285"       "136"       "119"       "136"       "284"       "132"       "284"      
       X2005A00143 X2005A00152 X2005A00195 X2005A00238 X2005A00251 X2005A00323 X2005A00362
  [1,] "  7"       "  8"       "  9"       "  6"       "932"       "  7"       "  6"      
  [2,] "284"       "285"       "286"       "283"       "897"       "284"       "283"      
       X2005A00382 X2005A00383 X2005A00472 X2005A00505 X2005A00518 X2005A00869 X2005A00885
  [1,] "  7"       "  5"       "  7"       " 11"       "  5"       "  6"       " 557"     
  [2,] "284"       "282"       "284"       "288"       "282"       "283"       " 520"     
       X2005A00889 X2005A00892 X2005A00921 X2005A00930 X2005A00955 X2005A01102 X2005A01117
  [1,] "  8"       "  8"       "490"       "271"       "495"       "  7"       "  9"      
  [2,] "285"       "285"       "455"       "136"       "460"       "284"       "286"      
       X2005A01122 X2005A01128 X2005A01132 X2005A01160 X2005A01162 X2005A01185 X2005A01199
  [1,] "  8"       "  4"       "  6"       " 10"       "  5"       "  8"       "420"      
  [2,] "285"       "281"       "283"       "287"       "282"       "285"       "383"      
       X2005A01263 X2005A01264 X2005A01697 X2005A01705 X2005A01712 X2005A01714 X2005A01763
  [1,] "  7"       "  9"       "  6"       "194"       "  6"       "  9"       "274"      
  [2,] "284"       "286"       "283"       "247"       "283"       "286"       "139"      
       X2005A01780 X2005A01796 X2005A01797 X2005A01799 X2005A01800 X2005A02317 X2005A02318
  [1,] "  9"       "  9"       "  6"       "489"       "  8"       "  6"       " 11"      
  [2,] "284"       "286"       "283"       "454"       "285"       "283"       "288"      
       X2005A02319 X2005A02320 X2005A02321 X2005A02322 X2005A02589 X2006A01093 X2006A01094
  [1,] "  6"       "  9"       "  7"       "  7"       "  7"       "  9"       "  9"      
  [2,] "283"       "286"       "284"       "284"       "284"       "286"       "286"      
       X2006A01099 X2006A01101 X2006A01109 X2006A01110 X2006A01111 X2006A01418 X2006A01419
  [1,] "  9"       "  7"       "  5"       "  9"       "  9"       " 11"       "  6"      
  [2,] "286"       "284"       "282"       "286"       "286"       "288"       "283"      
       X2006A01421 X2006A01422 X2006A01423 X2006A01424 X2006A01425 X2006A01654 X2006A01656
  [1,] " 12"       "  9"       "  5"       "  6"       "490"       "  6"       " 12"      
  [2,] "289"       "284"       "282"       "283"       "455"       "283"       "289"      
       X2006A01660 X2006A01661 X2006A01663 X2006A01664 X2006A01665 X2006A01666 X2006A01667
  [1,] "  6"       "  9"       "  9"       "  9"       "  9"       "  9"       "  7"      
  [2,] "283"       "286"       "286"       "286"       "286"       "286"       "284"      
       X2006A01670 X2006A01671 X2006A01672 X2006A01675 X2006A01676 X2006A01677 X2006A01678
  [1,] "  9"       " 11"       " 10"       "  8"       "  6"       "482"       " 11"      
  [2,] "286"       "288"       "287"       "285"       "283"       "447"       "288"      
       X2006A01680 X2006A02687 X2006A02688 X2006A02689 X2006A02690 X2006A02691 X2006A02692
  [1,] "  8"       "  9"       "  6"       "484"       "  9"       " 11"       "  7"      
  [2,] "285"       "286"       "283"       "449"       "286"       "288"       "284"      
       X2006A02693 X2006A02694 X2006A02696 X2006A02698 X2006A02699 X2006A02700 X2006A02702
  [1,] "273"       "933"       "  7"       "490"       " 11"       " 10"       "  7"      
  [2,] "138"       "898"       "284"       "455"       "288"       "287"       "284"      
       X2006A02703 X2006A02704 X2006A02705 X2006A02706 X2006A02708 X2006A02709 X2006A02710
  [1,] "  9"       "  9"       "  5"       " 10"       "  7"       "  7"       "  8"      
  [2,] "286"       "286"       "282"       "287"       "284"       "284"       "285"      
       X2006A02711 X2006A03606 X2006A03607 X2006A03608 X2006A03612 X2006A03613 X2006A03614
  [1,] "489"       " 10"       "  8"       "  5"       "  5"       "  9"       "  6"      
  [2,] "454"       "287"       "285"       "282"       "282"       "286"       "283"      
       X2006A03615 X2006A03616 X2006A03617 X2006A03618 X2007A00164 X2007A00167 X2007A00168
  [1,] " 13"       "  8"       "  6"       "486"       "  9"       " 10"       " 10"      
  [2,] "290"       "285"       "283"       "451"       "286"       "287"       "287"      
       X2007A00169 X2007A00172 X2007A00173 X2007A00176 X2007A00177 X2007A01514 X2007A01516
  [1,] "490"       "  6"       "  9"       "  5"       "  6"       "  7"       "  7"      
  [2,] "455"       "283"       "286"       "282"       "283"       "284"       "284"      
       X2007A01517 X2007A01518 X2007A01519 X2007A01520 X2007A01521 X2007A01522 X2007A01933
  [1,] "  7"       "  6"       "  9"       "  8"       "  6"       " 10"       " 13"      
  [2,] "284"       "283"       "286"       "285"       "283"       "287"       "290"      
       X2007A03669 X2007A03670 X2007A03708 X2008A04386 X2008A04387 X2010A00507 X2010A02638
  [1,] " 11"       " 10"       "275"       "  7"       "  7"       " 12"       " 11"      
  [2,] "288"       "287"       "140"       "284"       "284"       "289"       "288"      
       X2010A02639 X2010A02817 X2018A00669 X2018A00670 X2018A00672 X2018A00673 X2018A00674
  [1,] " 10"       "  9"       "277"       "203"       "503"       "126"       "505"      
  [2,] "287"       "286"       "142"       "254"       "468"       "273"       "470"      
       X2018A00675 X2018A00676 X2018A00677 X2018A00679 X2018A00680 X2018A00681 X2018A00682
  [1,] " 13"       "  7"       "  5"       " 11"       "277"       " 13"       "  9"      
  [2,] "290"       "284"       "282"       "288"       "142"       "290"       "286"      
       X2018A00683 X2018A00684 X2018A00685 X2018A00686 X2018A00687 X2018A00688 X2018A00689
  [1,] " 14"       " 14"       " 12"       " 11"       "499"       "  6"       "499"      
  [2,] "291"       "291"       "289"       "288"       "464"       "283"       "464"      
       X2018A00690 X2018A00691 X2018A00692 X2018A00693 X2018A00694 X2018A00695 X2018A00696
  [1,] "484"       "498"       "  6"       "  9"       " 15"       "  8"       "480"      
  [2,] "449"       "463"       "283"       "286"       "292"       "285"       "445"      
       X2018A00697 X2018A00698 X2018A00699 X2018A00701 X2018A00702 X2018A00703 X2018A00705
  [1,] "  7"       "493"       "497"       "  9"       " 10"       "271"       "273"      
  [2,] "284"       "458"       "462"       "286"       "287"       "134"       "138"      
       X2018A00706 X2018A00707 X2018A00708 X2018A00710 X2018A00711 X2018A00712 X2018A00713
  [1,] " 10"       "  7"       "275"       "485"       "269"       " 10"       "500"      
  [2,] "287"       "284"       "138"       "450"       "132"       "287"       "465"      
       X2018A00715 X2018A00716 X2018A00717 X2018A00719 X2018A00722 X2018A00723 X2018A00724
  [1,] " 11"       "485"       "  9"       "  8"       " 10"       "  9"       "483"      
  [2,] "288"       "450"       "286"       "285"       "287"       "286"       "450"      
       X2018A00725 X2018A00728 X2018A00729 X2018A00730 X2018A00732 X2018A00733 X2018A00735
  [1,] "  8"       " 949"      "486"       "  9"       "496"       " 11"       "128"      
  [2,] "285"       " 914"      "451"       "286"       "461"       "288"       "275"      
       X2018A00736 X2018A00737 X2018A00740 X2018A00741 X2018A00743 X2018A00744 X2018A00745
  [1,] "277"       " 13"       "  8"       "  6"       " 10"       "262"       "272"      
  [2,] "142"       "290"       "285"       "283"       "287"       "127"       "137"      
       X2018A00746 X2018A00747 X2018A00750 X2018A00751 X2018A00753 X2018A00754 X2018A00755
  [1,] "487"       "  8"       " 12"       " 14"       "  6"       "489"       "  6"      
  [2,] "452"       "285"       "289"       "291"       "283"       "454"       "283"      
       X2018A00756 X2018A00758 X2018A00759 X2018A00762 X2018A00763 X2018A00764 X2018A00765
  [1,] "270"       "502"       "491"       "481"       " 10"       "493"       " 12"      
  [2,] "133"       "467"       "456"       "446"       "287"       "458"       "289"      
       X2018A00766 X2018A00767 X2018A00768 X2018A00770 X2018A00771 X2018A00772 X2018A00775
  [1,] "481"       " 17"       " 10"       "460"       " 12"       "500"       "  9"      
  [2,] "446"       "294"       "287"       "425"       "289"       "465"       "286"      
       X2018A00776 X2018A00777 X2018A00778 X2018A00779 X2018A00780 X2018A00782 X2018A00783
  [1,] "272"       "271"       "  8"       " 10"       "487"       " 10"       "  9"      
  [2,] "137"       "136"       "285"       "287"       "452"       "287"       "286"      
       X2018A00785 X2018A00787 X2018A00788 X2018A00789 X2018A00790 X2018A00793 X2018A00794
  [1,] "  8"       " 14"       "278"       "  9"       " 10"       "  6"       "  6"      
  [2,] "285"       "291"       "141"       "286"       "287"       "283"       "283"      
       X2018A00795 X2018A00796 X2018A00797 X2018A00799 X2018A00801 X2018A00802 X2018A00803
  [1,] "  9"       "  8"       "277"       "510"       "  8"       " 14"       "  8"      
  [2,] "286"       "285"       "142"       "475"       "285"       "291"       "285"      
       X2018A00804 X2018A00805 X2018A00807 X2018A00809 X2018A00811 X2018A00813 X2018A00814
  [1,] "499"       "  9"       "275"       "  9"       "273"       "510"       " 14"      
  [2,] "464"       "286"       "140"       "286"       "138"       "475"       "291"      
       X2018A00818 X2018A00820 X2018A00825 X2018A00828 X2018A00829 X2018A00830 X2018A00832
  [1,] "498"       "492"       "273"       "  6"       "498"       "496"       "  5"      
  [2,] "463"       "457"       "138"       "283"       "463"       "461"       "282"      
       X2018A00834 X2018A00835 X2018A00838 X2018A00839 X2018A00841 X2018A01091 X2018A01095
  [1,] "  8"       "208"       "  6"       "457"       "481"       "  9"       "  6"      
  [2,] "285"       "259"       "283"       "422"       "446"       "286"       "283"      
       X2018A01100 X2018A01102 X2018A01104 X2018A01105 X2018A01109 X2018A01111 X2018A01117
  [1,] "  9"       " 14"       "  8"       "  6"       "  7"       " 13"       " 11"      
  [2,] "286"       "291"       "285"       "283"       "284"       "290"       "288"      
       X2018A01119 X2018A01121 X2018A01123 X2018A01125 X2018A01129 X2018A01131 X2018A01134
  [1,] " 15"       "483"       " 16"       "488"       "517"       " 10"       "278"      
  [2,] "292"       "448"       "293"       "453"       "482"       "287"       "143"      
       X2018A01140 X2018A01142 X2018A01152 X2018A01153 X2018A01155 X2018A01163 X2018A01173
  [1,] "477"       "271"       " 11"       "484"       "  8"       " 12"       "527"      
  [2,] "442"       "136"       "288"       "449"       "285"       "289"       "492"      
       X2018A01177 X2018A01179 X2018A01182 X2018A01183 X2018A01185 X2018A01193 X2018A01195
  [1,] " 10"       "277"       "124"       "275"       "  6"       "  9"       "500"      
  [2,] "287"       "142"       "271"       "140"       "283"       "286"       "465"      
       X2018A01199 X2018A01204 X2018A01205 X2018A01208 X2018A01213 X2018A01216 X2018A01218
  [1,] "522"       "500"       "  7"       "  7"       "  5"       "  6"       "  9"      
  [2,] "487"       "465"       "284"       "284"       "282"       "283"       "286"      
       X2018A01220 X2018A01224 X2018A01228 X2018A01240 X2018A01243 X2018A01245 X2018A01248
  [1,] " 12"       "  5"       "  9"       " 11"       "277"       "281"       "498"      
  [2,] "289"       "282"       "286"       "288"       "140"       "198"       "463"      
       X2018A01249 X2018A01253 X2018A01256
  [1,] "501"       "512"       "522"      
  [2,] "466"       "477"       "485"      
 [ reached getOption("max.print") -- omitted 378 rows ]

$tcutoff
<0 x 0 matrix>

$lambda
[1] 1

$beta
[1] 1

$perc
[1] 0.2

$thSNP
 [1]  1  2  3  4  5  6  7  8  9 10

$thTrans
 [1]  1  2  3  4  5  6  7  8  9 10

Which then yields:

Error in N - i : non-numeric argument to binary operator```
@pcjentsch
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pcjentsch commented Mar 4, 2022 •
edited
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you need to give your dates in year-decimal format, see the sample data

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