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Commits on Jul 4, 2022

• Merge pull request Ensembl#81 from Ensembl/fix/htslib_readme

  Show description for 9edb59e
  dzerbino

  authored
  9edb59e

• Fix README (htslib)

  sgiorgetti

  committed
  25ead7e

Commits on Mar 14, 2022

• Adding version number to command line help, closing Ensembl#74

  dzerbino

  committed
  b082056

Commits on Feb 27, 2022

• Typo

  dzerbino

  committed
  72a605b

Commits on Jun 24, 2021

• Skipped unmapped BAM reads with coordinates

  dzerbino

  committed
  d166db5

Commits on Jun 12, 2021

• Adding commonly used BigBed extensions, closing Ensembl#71

  dzerbino

  committed
  97f23f2

Commits on Mar 25, 2021

• Typo in overshot check?

  dzerbino

  committed
  5c6bb8c

• Streamlined the apply function

  dzerbino

  committed
  9561e24

• Improved error message in Bam parser

  dzerbino

  committed
  5747226

• Missing paramter passing, doh!

  dzerbino

  committed
  33efa46

• Fast interruption of BAM reader

  dzerbino

  committed
  50e22b1

• Implemented hash-fib queue for SAM/BAM/CRAM readers

  dzerbino

  committed
  cf2d612

• Added read count functionality

  dzerbino

  committed
  7210371

Commits on Jan 17, 2021

• Merge pull request Ensembl#65 from jmarshall/misc

  Show description for 8ae0a40
  dzerbino

  authored
  8ae0a40

Commits on Jan 16, 2021

• Use fabs(), as both argument and destination are doubles

  Show description for 43ed1f5
  jmarshall

  committed
  43ed1f5

• Use the standard CPPFLAGS and LDFLAGS make variables

  Show description for 9d5137a
  jmarshall

  committed
  9d5137a

Commits on Jan 7, 2021

• Testing accuracy of seek, and correcting for off by one errors

  dzerbino

  committed
  8f7b9a2

• Memory bug when seeking on a Bed file

  dzerbino

  committed
  af94ce0

• Checking for BCF index file when seeking

  dzerbino

  committed
  ead5657

Commits on Jan 6, 2021

• Squashing bug in BCF seek function

  dzerbino

  committed
  c93cec3

Commits on Jan 1, 2021

• Reverting misguided correction and commenting code to avoid future confusion

  dzerbino

  committed
  03a93fc

Commits on Dec 31, 2020

• Updating forgotten WiggleIterator constructor calls

  dzerbino

  committed
  30805b7

Commits on Dec 30, 2020

• Implemented compression keyword

  dzerbino

  committed
  94e11c4

• Fixed implicit infinite loop

  dzerbino

  committed
  495986e

• Corrected edge effect in BigBed reader

  dzerbino

  committed
  3ac8c41

• Corrected edge effect in bigWig reader

  dzerbino

  committed
  7c6a5f6

• Cleaning up bin function for clarity

  dzerbino

  committed
  6afb0cf

• Removing unwanted side-effects of union operator on otherwise valid numerical iterators

  dzerbino

  committed
  038a1b6

• Removing implicit compression of high pass filter

  dzerbino

  committed
  6723a1b

• Removing redundant declaration

  dzerbino

  committed
  4ebd2bc

• Cleaning up handling of overlapping attribute

  dzerbino

  committed
  69eaef6

Commits on Dec 29, 2020

• Removed static linking from compilation

  dzerbino

  committed
  5b4f2a4

Commits on Dec 28, 2020

• Squashed compiler warnings

  dzerbino

  committed
  4574596

Commits on Dec 27, 2020

• Adding tests for comparators

  dzerbino

  committed
  ba79c3a

• Added gte and lte operators, closing Ensembl#54.

  dzerbino

  committed
  1ebb093

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