__init__.py

"""MNE for MEG and EEG data analysis
"""

# PEP0440 compatible formatted version, see:
# https://www.python.org/dev/peps/pep-0440/
#
# Generic release markers:
#   X.Y
#   X.Y.Z   # For bugfix releases
#
# Admissible pre-release markers:
#   X.YaN   # Alpha release
#   X.YbN   # Beta release
#   X.YrcN  # Release Candidate
#   X.Y     # Final release
#
# Dev branch marker is: 'X.Y.devN' where N is an integer.
#

__version__ = '0.10.dev0'

# have to import verbose first since it's needed by many things
from .utils import (set_log_level, set_log_file, verbose, set_config,
                    get_config, get_config_path, set_cache_dir,
                    set_memmap_min_size)
from .io.pick import (pick_types, pick_channels,
                      pick_channels_regexp, pick_channels_forward,
                      pick_types_forward, pick_channels_cov,
                      pick_channels_evoked, pick_info)
from .io.base import concatenate_raws
from .chpi import get_chpi_positions
from .io.meas_info import create_info
from .io.kit import read_epochs_kit
from .bem import (make_sphere_model, make_bem_model, make_bem_solution,
                  read_bem_surfaces, write_bem_surface, write_bem_surfaces,
                  read_bem_solution, write_bem_solution)
from .cov import (read_cov, write_cov, Covariance,
                  compute_covariance, compute_raw_data_covariance,
                  compute_raw_covariance, whiten_evoked, make_ad_hoc_cov)
from .event import (read_events, write_events, find_events, merge_events,
                    pick_events, make_fixed_length_events, concatenate_events,
                    find_stim_steps)
from .forward import (read_forward_solution, apply_forward, apply_forward_raw,
                      do_forward_solution, average_forward_solutions,
                      write_forward_solution, make_forward_solution,
                      convert_forward_solution, make_field_map)
from .source_estimate import (read_source_estimate, MixedSourceEstimate,
                              SourceEstimate, VolSourceEstimate, morph_data,
                              morph_data_precomputed, compute_morph_matrix,
                              grade_to_tris, grade_to_vertices,
                              spatial_src_connectivity,
                              spatial_tris_connectivity,
                              spatial_dist_connectivity,
                              spatio_temporal_src_connectivity,
                              spatio_temporal_tris_connectivity,
                              spatio_temporal_dist_connectivity,
                              save_stc_as_volume, extract_label_time_course)
from .surface import (read_surface, write_surface, decimate_surface,
                      read_morph_map, get_head_surf, get_meg_helmet_surf)
from .source_space import (read_source_spaces, vertex_to_mni,
                           write_source_spaces, setup_source_space,
                           setup_volume_source_space, SourceSpaces,
                           add_source_space_distances, morph_source_spaces,
                           get_volume_labels_from_aseg)
from .epochs import Epochs, EpochsArray, read_epochs
from .evoked import (Evoked, EvokedArray, read_evokeds, write_evokeds,
                     grand_average, combine_evoked)
from .label import (read_label, label_sign_flip,
                    write_label, stc_to_label, grow_labels, Label, split_label,
                    BiHemiLabel, read_labels_from_annot, write_labels_to_annot)
from .misc import parse_config, read_reject_parameters
from .coreg import (create_default_subject, scale_bem, scale_mri, scale_labels,
                    scale_source_space)
from .transforms import (read_trans, write_trans,
                         transform_surface_to, Transform)
from .proj import (read_proj, write_proj, compute_proj_epochs,
                   compute_proj_evoked, compute_proj_raw, sensitivity_map)
from .selection import read_selection
from .dipole import read_dipole, Dipole, fit_dipole
from .channels import equalize_channels, rename_channels, find_layout

from . import beamformer
from . import channels
from . import chpi
from . import commands
from . import connectivity
from . import coreg
from . import cuda
from . import datasets
from . import epochs
from . import externals
from . import io
from . import filter
from . import gui
from . import minimum_norm
from . import preprocessing
from . import simulation
from . import stats
from . import time_frequency
from . import viz
from . import decoding
from . import realtime

# initialize logging
set_log_level(None, False)
set_log_file()