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Detecting cyclic consensus sequences in nanopore long reads

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circtools

Accelerating functions in CIRI toolkit

Author

Author & Maintainer: Jinyang Zhang([email protected])

Release Notes

version 1.0: First released version

License

The code is released under the MIT License. See the LICENSE file for more detail

Installation

Dependency

  • rust 1.50.0
  • cmake 3.2+

Compile circtools

  1. Install Rust
curl https://sh.rustup.rs -sSf | sh
  1. Install circtools
git clone --recursive https://github.com/Kevinzjy/circtools.git
cargo build --release

The process should be finished within ~1min.

  1. Copy compiled binary to somewhere you want, and add it to $PATH
cp ./target/release/ccs your/path
export PATH=your/path:$PATH

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Detecting cyclic consensus sequences in nanopore long reads

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