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metamaplite.properties
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metamaplite.properties
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# MetaMap Lite configuration
#
# Lucene indexes
# metamaplite.cuiconceptindex: data/lucenedb/strict/cuiconcept
# metamaplite.firstwordsofonewideindex: data/lucenedb/strict/first_words_of_one_WIDE
# metamaplite.cuisourceinfoindex: data/lucenedb/strict/cui_sourceinfo
# metamaplite.cuisemantictypeindex: data/lucenedb/strict/cui_st
# metamaplite.varsindex: data/lucenedb/strict/vars
# irutils indexes
metamaplite.index.directory: data/ivf/strict
# default semantic.type.list: if not defined is empty (all semantic types)
# semantic type abbreviations separated by commas.
# For example:
# metamaplite.semanticgroup: acab,anab,bact,cgab,dsyn,emod,inpo,mobd,neop,patf,sosy
metamaplite.semanticgroup: all
# OpenNLP model files
opennlp.en-sent.bin.path: data/models/en-sent.bin
opennlp.en-token.bin.path: data/models/en-token.bin
opennlp.en-pos.bin.path: data/models/en-pos-maxent.bin
opennlp.en-chunker.bin.path: data/models/en-chunker.bin
# user defined concepts file
# metamaplite.cuitermlistfile.filename: custom.concepts
# What should a pipeline look-like?
#
# pipe-elements: (properties)
#
# metamaplite.pipe.element.<element-name>: transformation method|input class|output class
#
# pipeline: (one property line)
#
# metamaplite.pipeline.<name>: element1|element2|...
#
# sentence pipeline elements
#
metamaplite.pipe.element.analyzetext: gov.nih.nlm.nls.metamap.prefix.Scanner.analyzeText|gov.nih.nlm.nls.types.Sentence|java.util.List|tokenize sentence
metamaplite.pipe.element.displaytokenlist: gov.nih.nlm.nls.metamap.prefix.Tokenize.displayTokenList|java.util.List|java.util.List|display tokenlist
metamaplite.pipe.element.genentityset: gov.nih.nlm.nls.metamap.lite.EntityLookup1.generateEntitySet|java.util.List|java.util.List|find entities
metamaplite.pipe.element.displayentityset: gov.nih.nlm.nls.metamap.lite.EntityLookup1.displayEntitySet|java.util.Set|void|display entities
#
# sentence pipeline
#
metamaplite.pipeline.simple.sentence: analyzetext|genentityset|displayentityset
#
# text pipeline elements
#
metamaplite.pipe.element.createSentenceList: gov.nih.nlm.nls.metamap.lite.SentenceExtractor.createSentenceList|java.lang.String|java.util.List|extract sentences from text
metamaplite.pipe.element.processSentenceList: gov.nih.nlm.nls.metamap.lite.Pipeline.processSentenceList|java.util.List|java.util.List|process sentences with pipeline: metamaplite.pipeline.simple.sentence
#
# text pipeline
#
metamaplite.pipeline.simple.text: createSentenceList|processSentenceList
# BioC Document Loaders
bioc.document.loader.chemdner: gov.nih.nlm.nls.metamap.document.ChemDNER
bioc.document.loader-description.chemdner: ChemDNER Document Loader
bioc.document.loader.freetext: gov.nih.nlm.nls.metamap.document.FreeText
bioc.document.loader-description.freetext: For freetext documents without markup
bioc.document.loader.ncbicorpus: gov.nih.nlm.nls.metamap.document.NCBICorpusDocument
bioc.document.loader-description.ncbicorpus: NCBI corpus documents
# bioc.document.loader.qadocument: gov.nih.nlm.nls.metamap.document.QAKeyValueDocument
# bioc.document.loader-description.qadocument: Q/A format 1?
# bioc.document.loader.sldiwi: gov.nih.nlm.nls.metamap.document.SingleLineDelimitedInputWithID
# bioc.document.loader-description.sldiwi: Single line delimited input with id
# Pubmed RIS Format Document Loader
bioc.document.loader.ris: gov.nih.nlm.nls.metamap.document.PubMedRISFormat
bioc.document.loader-description.ris: PubMed RIS Format Documents
# Excluded (special) terms
metamaplite.excluded.termsfile: data/specialterms.txt
# Indicator strings for Senseval loader (property should probably be
# renamed.
metamaplite.indicator.stringsfile: data/Sections.20110511.csv
# Negation detector to use:
metamaplite.negation.detector: gov.nih.nlm.nls.metamap.lite.NegEx
# metamaplite.negation.detector: gov.nih.nlm.nls.metamap.lite.context.ContextWrapper
# full result formatter for debugging
metamaplite.result.formatter.full=gov.nih.nlm.nls.metamap.lite.resultformats.Full
# BioCreative Evaluator style formatter
metamaplite.result.formatter.BC=gov.nih.nlm.nls.metamap.lite.resultformats.BcEvaluate
metamaplite.result.formatter.CEM=gov.nih.nlm.nls.metamap.lite.resultformats.CEMFormat
metamaplite.result.formatter.CEMPlus=gov.nih.nlm.nls.metamap.lite.resultformats.CEMPlusFormat
# Custom part-of-speech tagging example: uncomment to use these part
# of speech tags for term lookup (no adjectives) rather than the
# default:
# metamaplite.postaglist: RB,NN,NNS,NNP,NNPS