Commits

Branch selector

 main

User selector

All users

Datepicker

All time

Commit History

Commits on Sep 26, 2023

• add missing rst files, fix notebooks

  DavyCats

  committed
  87b0b80

  Copy full SHA for 87b0b80

Commits on Jun 1, 2022

• Merge pull request bayraktar1#14 from bayraktar1/dev

  Show description for 918827c
  bayraktar1

  authored
  918827c

  Copy full SHA for 918827c

• Make SAM files temporary

  

  bayraktar1

  committed
  c7c8dc4

  Copy full SHA for c7c8dc4

Commits on May 31, 2022

• update count_stats

  

  bayraktar1

  committed
  8ed00ed

  Copy full SHA for 8ed00ed

• sort talon, add comments

  

  bayraktar1

  committed
  07ec0bc

  Copy full SHA for 07ec0bc

• Update rule all

  

  bayraktar1

  committed
  2b5b1c1

  Copy full SHA for 2b5b1c1

Commits on May 23, 2022

• Do not generate .tmap and .refmap files for each input file

  

  bayraktar1

  committed
  8cd3a15

  Copy full SHA for 8cd3a15

Commits on May 19, 2022

• Merge pull request bayraktar1#13 from bayraktar1/dev

  Show description for 93e576e
  bayraktar1

  authored
  93e576e

  Copy full SHA for 93e576e

Commits on May 18, 2022

• update README.md

  

  bayraktar1

  committed
  40024e3

  Copy full SHA for 40024e3

• update script documentation

  

  bayraktar1

  committed
  2f56761

  Copy full SHA for 2f56761

Commits on May 16, 2022

• Merge pull request bayraktar1#12 from bayraktar1/dev

  Show description for 0f60da6
  bayraktar1

  authored
  0f60da6

  Copy full SHA for 0f60da6

• Add log file and removed FLAIR GTF

  bayraktar1

  authored
  c244e01

  Copy full SHA for c244e01

• Merge pull request bayraktar1#11 from bayraktar1/dev

  Show description for f8e6520
  bayraktar1

  authored
  f8e6520

  Copy full SHA for f8e6520

• update flowchart

  

  bayraktar1

  committed
  452fa74

  Copy full SHA for 452fa74

Commits on May 13, 2022

• adjust oxford_abundance rule

  

  bayraktar1

  committed
  cf8d36d

  Copy full SHA for cf8d36d

• Add additonal plots

  

  bayraktar1

  committed
  189e754

  Copy full SHA for 189e754

• Adjust exon_comparison.py

  

  bayraktar1

  committed
  740cfbc

  Copy full SHA for 740cfbc

Commits on May 6, 2022

• Adjust for full samtools-stats file

  

  bayraktar1

  committed
  a9fdfa9

  Copy full SHA for a9fdfa9

• Adjust for full samtools-stats file

  

  bayraktar1

  committed
  ab106ff

  Copy full SHA for ab106ff

• Add get_num_of_exons.py

  

  bayraktar1

  committed
  75b95ea

  Copy full SHA for 75b95ea

Commits on Apr 28, 2022

• update flowchart

  

  bayraktar1

  committed
  21c11df

  Copy full SHA for 21c11df

• Add rule multiQC, add output rule combine

  

  bayraktar1

  committed
  74b1eb2

  Copy full SHA for 74b1eb2

• extract removed transcripts to GTF

  

  bayraktar1

  committed
  05b45c8

  Copy full SHA for 05b45c8

Commits on Apr 26, 2022

• Merge pull request bayraktar1#10 from bayraktar1/dev

  Show description for 68f9de4
  bayraktar1

  authored
  68f9de4

  Copy full SHA for 68f9de4

• output one of the matched transcripts

  

  bayraktar1

  committed
  6ac6032

  Copy full SHA for 6ac6032

• rotate plot labels

  

  bayraktar1

  committed
  327a511

  Copy full SHA for 327a511

• change plot name

  

  bayraktar1

  committed
  876e0ab

  Copy full SHA for 876e0ab

Commits on Apr 22, 2022

• Add NanoPlots rule, adjust sqanti3 input

  

  bayraktar1

  committed
  93033fb

  Copy full SHA for 93033fb

Commits on Apr 13, 2022

• fix typo

  

  bayraktar1

  committed
  4ba8c52

  Copy full SHA for 4ba8c52

• Fix sqanti3 rule, add output numbering, add extract output

  

  bayraktar1

  committed
  e76b2c2

  Copy full SHA for e76b2c2

• Fix combine.py logging

  

  bayraktar1

  committed
  dd524d2

  Copy full SHA for dd524d2

• Add notes section

  

  bayraktar1

  committed
  8cd9d7a

  Copy full SHA for 8cd9d7a

• fix summ.txt output

  

  bayraktar1

  committed
  7b0d230

  Copy full SHA for 7b0d230

Commits on Apr 12, 2022

• fix summ.txt output

  

  bayraktar1

  committed
  541b79d

  Copy full SHA for 541b79d

Commits on Apr 8, 2022

• add extract overlap

  

  bayraktar1

  committed
  dce054a

  Copy full SHA for dce054a

Pagination

Previous

Next