diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index e70585d0c52e..01d9a537e505 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -16,12 +16,12 @@ Thanks for your interest in contributing code to numpy! + If this is your first time contributing to a project on GitHub, please read through our -[guide to contributing to numpy](http://docs.scipy.org/doc/numpy/dev/index.html) +[guide to contributing to numpy](https://docs.scipy.org/doc/numpy/dev/index.html) + If you have contributed to other projects on GitHub you can go straight to our -[development workflow](http://docs.scipy.org/doc/numpy/dev/gitwash/development_workflow.html) +[development workflow](https://docs.scipy.org/doc/numpy/dev/gitwash/development_workflow.html) Either way, please be sure to follow our -[convention for commit messages](http://docs.scipy.org/doc/numpy/dev/gitwash/development_workflow.html#writing-the-commit-message). +[convention for commit messages](https://docs.scipy.org/doc/numpy/dev/gitwash/development_workflow.html#writing-the-commit-message). If you are writing new C code, please follow the style described in ``doc/C_STYLE_GUIDE``. diff --git a/INSTALL.rst.txt b/INSTALL.rst.txt index d8ca80d926e5..a81468d9f214 100644 --- a/INSTALL.rst.txt +++ b/INSTALL.rst.txt @@ -4,7 +4,7 @@ Building and installing NumPy **IMPORTANT**: the below notes are about building NumPy, which for most users is *not* the recommended way to install NumPy. Instead, use either a complete scientific Python distribution (recommended) or a binary installer - see -http://scipy.org/install.html. +https://scipy.org/install.html. .. Contents:: @@ -33,20 +33,20 @@ Building NumPy requires the following software installed: This is required for testing numpy, but not for using it. -Python__ http://www.python.org -nose__ http://nose.readthedocs.io +Python__ https://www.python.org +nose__ https://nose.readthedocs.io .. note:: If you want to build NumPy in order to work on NumPy itself, use ``runtests.py``. For more details, see - http://docs.scipy.org/doc/numpy/dev/development_environment.html + https://docs.scipy.org/doc/numpy/dev/development_environment.html .. note:: More extensive information on building NumPy (and Scipy) is maintained at - http://scipy.org/scipylib/building/index.html + https://scipy.github.io/devdocs/building/ Basic Installation @@ -100,7 +100,7 @@ The older MinGW32 compiler set used to produce older .exe installers for NumPy itself is still available at https://github.com/numpy/numpy-vendor, but not recommended for use anymore. -MingwPy__ http://mingwpy.github.io +MingwPy__ https://mingwpy.github.io Building with optimized BLAS support @@ -117,7 +117,7 @@ Windows The Intel compilers work with Intel MKL, see the application note linked above. MingwPy__ works with OpenBLAS. For an overview of the state of BLAS/LAPACK libraries on Windows, see -`here `_. +`here `_. OS X ---- @@ -155,6 +155,6 @@ Build issues ============ If you run into build issues and need help, the NumPy -`mailing list `_ is the best +`mailing list `_ is the best place to ask. If the issue is clearly a bug in NumPy, please file an issue (or even better, a pull request) at https://github.com/numpy/numpy. diff --git a/README.md b/README.md index cd11b7bc5289..e069a91216f5 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ NumPy is the fundamental package needed for scientific computing with Python. -- **Website (including documentation):** http://www.numpy.org +- **Website (including documentation):** https://www.numpy.org - **Mailing list:** https://mail.python.org/mailman/listinfo/numpy-discussion - **Source:** https://github.com/numpy/numpy - **Bug reports:** https://github.com/numpy/numpy/issues diff --git a/benchmarks/asv.conf.json b/benchmarks/asv.conf.json index d837b0d6719c..653b48a0857d 100644 --- a/benchmarks/asv.conf.json +++ b/benchmarks/asv.conf.json @@ -7,7 +7,7 @@ "project": "numpy", // The project's homepage - "project_url": "http://numpy.org/", + "project_url": "https://www.numpy.org/", // The URL or local path of the source code repository for the // project being benchmarked diff --git a/doc/CAPI.rst.txt b/doc/CAPI.rst.txt index f38815e2a657..ccee0fdb64a0 100644 --- a/doc/CAPI.rst.txt +++ b/doc/CAPI.rst.txt @@ -6,7 +6,7 @@ C-API for NumPy :Discussions to: `numpy-discussion@python.org`__ :Created: October 2005 -__ http://scipy.org/scipylib/mailing-lists.html +__ https://scipy.org/scipylib/mailing-lists.html The C API of NumPy is (mostly) backward compatible with Numeric. diff --git a/doc/HOWTO_RELEASE.rst.txt b/doc/HOWTO_RELEASE.rst.txt index 3ed15e99cc51..f849effa1ce9 100644 --- a/doc/HOWTO_RELEASE.rst.txt +++ b/doc/HOWTO_RELEASE.rst.txt @@ -18,16 +18,16 @@ Source tree NumPy Docs ---------- * https://github.com/numpy/numpy/blob/master/doc/HOWTO_RELEASE.rst.txt -* http://projects.scipy.org/numpy/wiki/MicrosoftToolchainSupport +* http://projects.scipy.org/numpy/wiki/MicrosoftToolchainSupport (dead link) SciPy.org wiki -------------- -* http://www.scipy.org/Installing_SciPy and links on that page. -* http://new.scipy.org/building/windows.html +* https://www.scipy.org/Installing_SciPy and links on that page. +* http://new.scipy.org/building/windows.html (dead link) Doc wiki -------- -* http://docs.scipy.org/numpy/docs/numpy-docs/user/install.rst/ +* http://docs.scipy.org/numpy/docs/numpy-docs/user/install.rst/ (dead link) Release Scripts --------------- @@ -56,7 +56,7 @@ Windows We build 32- and 64-bit wheels for Python 2.7, 3.4, 3.5 on Windows. Windows XP, Vista, 7, 8 and 10 are supported. We build numpy using the MSVC compilers on Appveyor, but we are hoping to update to a `mingw-w64 toolchain -`_. The Windows wheels use ATLAS for BLAS / LAPACK. +`_. The Windows wheels use ATLAS for BLAS / LAPACK. Linux ----- @@ -101,7 +101,7 @@ Building source archives and wheels You will need write permission for numpy-wheels in order to trigger wheel builds. -* Python(s) from `python.org `_ or linux distro. +* Python(s) from `python.org `_ or linux distro. * cython * virtualenv (pip) * Paver (pip) @@ -131,7 +131,7 @@ Generating author/pr lists -------------------------- You will need an personal access token -``_ +``_ so that scripts can access the github numpy repository * gitpython (pip) @@ -206,7 +206,7 @@ Do:: to check that the documentation is in a buildable state. See doc/HOWTO_BUILD_DOCS.rst.txt for more details and for how to update -http://docs.scipy.org. +https://docs.scipy.org. Check deprecations ------------------ @@ -322,7 +322,7 @@ message). Unfortunately the name of a tag can be changed without breaking the signature, the contents of the message cannot. See : https://github.com/scipy/scipy/issues/4919 for a discussion of signing -release tags, and http://keyring.debian.org/creating-key.html for instructions +release tags, and https://keyring.debian.org/creating-key.html for instructions on creating a GPG key if you do not have one. To make your key more readily identifiable as you, consider sending your key @@ -387,7 +387,7 @@ The tar-files and binary releases for distribution should be uploaded to SourceF together with the Release Notes and the Changelog. Uploading can be done through a web interface or, more efficiently, through scp/sftp/rsync as described in the SourceForge -`upload guide `_. +`upload guide `_ (dead link). For example:: scp ,numpy@frs.sourceforge.net:/home/frs/project/n/nu/numpy/NumPy// @@ -472,7 +472,7 @@ repository. Update docs.scipy.org --------------------- -All documentation for a release can be updated on http://docs.scipy.org/ with: +All documentation for a release can be updated on https://docs.scipy.org/ with: make dist make upload USERNAME= RELEASE=1.11.0 diff --git a/doc/Py3K.rst.txt b/doc/Py3K.rst.txt index 44111eeb5710..f78b9e5db0f2 100644 --- a/doc/Py3K.rst.txt +++ b/doc/Py3K.rst.txt @@ -22,8 +22,8 @@ Resources Information on porting to 3K: -- http://wiki.python.org/moin/cporting -- http://wiki.python.org/moin/PortingExtensionModulesToPy3k +- https://wiki.python.org/moin/cporting +- https://wiki.python.org/moin/PortingExtensionModulesToPy3k Prerequisites diff --git a/doc/TESTS.rst.txt b/doc/TESTS.rst.txt index 68b0eace4a78..1705191101ba 100644 --- a/doc/TESTS.rst.txt +++ b/doc/TESTS.rst.txt @@ -9,17 +9,17 @@ Introduction '''''''''''' SciPy uses the `Nose testing system -`__, with some +`__, with some minor convenience features added. Nose is an extension of the unit testing framework offered by `unittest.py -`__. Our goal is that +`__. Our goal is that every module and package in SciPy should have a thorough set of unit tests. These tests should exercise the full functionality of a given routine as well as its robustness to erroneous or unexpected input arguments. Long experience has shown that by far the best time to write the tests is before you write or change the code - this is `test-driven development -`__. The +`__. The arguments for this can sound rather abstract, but we can assure you that you will find that writing the tests first leads to more robust and better designed code. Well-designed tests with good coverage make @@ -306,7 +306,7 @@ minor variations, it can be helpful to create a base class containing all the common tests, and then create a subclass for each variation. Several examples of this technique exist in NumPy; below are excerpts from one in `numpy/linalg/tests/test_linalg.py -`__:: +`__:: class LinalgTestCase: def test_single(self): diff --git a/doc/cdoc/Doxyfile b/doc/cdoc/Doxyfile index d80e985587b9..886a3440e25a 100644 --- a/doc/cdoc/Doxyfile +++ b/doc/cdoc/Doxyfile @@ -18,7 +18,7 @@ # that follow. The default is UTF-8 which is also the encoding used for all # text before the first occurrence of this tag. Doxygen uses libiconv (or the # iconv built into libc) for the transcoding. See -# http://www.gnu.org/software/libiconv for the list of possible encodings. +# https://www.gnu.org/software/libiconv for the list of possible encodings. DOXYFILE_ENCODING = UTF-8 @@ -596,7 +596,7 @@ INPUT = ../../numpy/core/src \ # This tag can be used to specify the character encoding of the source files # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is # also the default input encoding. Doxygen uses libiconv (or the iconv built -# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for +# into libc) for the transcoding. See https://www.gnu.org/software/libiconv for # the list of possible encodings. INPUT_ENCODING = UTF-8 @@ -739,7 +739,7 @@ REFERENCES_LINK_SOURCE = YES # If the USE_HTAGS tag is set to YES then the references to source code # will point to the HTML generated by the htags(1) tool instead of doxygen # built-in source browser. The htags tool is part of GNU's global source -# tagging system (see http://www.gnu.org/software/global/global.html). You +# tagging system (see https://www.gnu.org/software/global/global.html). You # will need version 4.8.6 or higher. USE_HTAGS = NO @@ -843,7 +843,8 @@ HTML_DYNAMIC_SECTIONS = NO # directory and running "make install" will install the docset in # ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find # it at startup. -# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more information. +# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html (dead link) +# for more information. GENERATE_DOCSET = NO @@ -920,30 +921,30 @@ QCH_FILE = # The QHP_NAMESPACE tag specifies the namespace to use when generating # Qt Help Project output. For more information please see -# http://doc.trolltech.com/qthelpproject.html#namespace +# https://doc.qt.io/qt-5/qthelpproject.html#namespace QHP_NAMESPACE = org.doxygen.Project # The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating # Qt Help Project output. For more information please see -# http://doc.trolltech.com/qthelpproject.html#virtual-folders +# https://doc.qt.io/qt-5/qthelpproject.html#virtual-folders QHP_VIRTUAL_FOLDER = doc # If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to add. # For more information please see -# http://doc.trolltech.com/qthelpproject.html#custom-filters +# https://doc.qt.io/qt-5/qthelpproject.html#custom-filters QHP_CUST_FILTER_NAME = # The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom filter to add.For more information please see -# Qt Help Project / Custom Filters. +# Qt Help Project / Custom Filters. QHP_CUST_FILTER_ATTRS = # The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this project's # filter section matches. -# Qt Help Project / Filter Attributes. +# Qt Help Project / Filter Attributes. QHP_SECT_FILTER_ATTRS = diff --git a/doc/neps/conf.py b/doc/neps/conf.py index aa11d37b3cfb..8cfb2b570370 100644 --- a/doc/neps/conf.py +++ b/doc/neps/conf.py @@ -100,7 +100,7 @@ ## to template names. ## ## This is required for the alabaster theme -## refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars +## refs: https://alabaster.readthedocs.io/en/latest/installation.html#sidebars #html_sidebars = { # '**': [ # 'relations.html', # needs 'show_related': True theme option to display @@ -127,8 +127,8 @@ "edit_link": True, "sidebar": "right", "scipy_org_logo": True, - "rootlinks": [("http://scipy.org/", "Scipy.org"), - ("http://docs.scipy.org/", "Docs")] + "rootlinks": [("https://scipy.org/", "Scipy.org"), + ("https://docs.scipy.org/", "Docs")] } else: # Default build diff --git a/doc/neps/nep-0000.rst b/doc/neps/nep-0000.rst index 9c6646db23b7..0824a5635c25 100644 --- a/doc/neps/nep-0000.rst +++ b/doc/neps/nep-0000.rst @@ -203,7 +203,7 @@ References and Footnotes `GitHub `_. .. [2] The URL for viewing NEPs on the web is - http://numpy.github.io/neps/. + https://www.numpy.org/neps/. .. _repo: https://github.com/numpy/numpy @@ -220,7 +220,7 @@ References and Footnotes .. _reStructuredTextPrimer: http://www.sphinx-doc.org/en/stable/rest.html -.. _Sphinx: www.sphinx-doc.org/en/stable +.. _Sphinx: http://www.sphinx-doc.org/en/stable/ Copyright diff --git a/doc/neps/nep-0001-npy-format.rst b/doc/neps/nep-0001-npy-format.rst index 2057aed83d4b..74512128d8fc 100644 --- a/doc/neps/nep-0001-npy-format.rst +++ b/doc/neps/nep-0001-npy-format.rst @@ -290,15 +290,15 @@ included in the 1.9.0 release of numpy. Specifically, the file format.py in this directory implements the format as described here. - http://github.com/numpy/numpy/blob/master/numpy/lib/format.py + https://github.com/numpy/numpy/blob/master/numpy/lib/format.py References ---------- -[1] http://docs.python.org/lib/module-pickle.html +[1] https://docs.python.org/library/pickle.html -[2] http://hdf.ncsa.uiuc.edu/products/hdf5/index.html +[2] https://support.hdfgroup.org/HDF5/ Copyright diff --git a/doc/neps/nep-0004-datetime-proposal3.rst b/doc/neps/nep-0004-datetime-proposal3.rst index 46d8e314bca0..afeb00d73502 100644 --- a/doc/neps/nep-0004-datetime-proposal3.rst +++ b/doc/neps/nep-0004-datetime-proposal3.rst @@ -562,9 +562,9 @@ examples of other derived units, and we find this a bit too overwhelming for this proposal purposes. -.. [1] http://docs.python.org/lib/module-datetime.html -.. [2] http://www.egenix.com/products/python/mxBase/mxDateTime -.. [3] http://en.wikipedia.org/wiki/Unix_time +.. [1] https://docs.python.org/library/datetime.html +.. [2] https://www.egenix.com/products/python/mxBase/mxDateTime +.. [3] https://en.wikipedia.org/wiki/Unix_time .. Local Variables: diff --git a/doc/neps/nep-0007-datetime-proposal.rst b/doc/neps/nep-0007-datetime-proposal.rst index 72d48d244782..90894da49e1b 100644 --- a/doc/neps/nep-0007-datetime-proposal.rst +++ b/doc/neps/nep-0007-datetime-proposal.rst @@ -662,9 +662,9 @@ operations mixing business days with other time units will not be allowed. -.. [1] http://docs.python.org/lib/module-datetime.html -.. [2] http://www.egenix.com/products/python/mxBase/mxDateTime -.. [3] http://en.wikipedia.org/wiki/Unix_time +.. [1] https://docs.python.org/library/datetime.html +.. [2] https://www.egenix.com/products/python/mxBase/mxDateTime +.. [3] https://en.wikipedia.org/wiki/Unix_time .. Local Variables: diff --git a/doc/neps/nep-0012-missing-data.rst b/doc/neps/nep-0012-missing-data.rst index 1553339f4ccd..57c45b4b6888 100644 --- a/doc/neps/nep-0012-missing-data.rst +++ b/doc/neps/nep-0012-missing-data.rst @@ -4,7 +4,7 @@ Missing Data Functionality in NumPy :Author: Mark Wiebe :Copyright: Copyright 2011 by Enthought, Inc -:License: CC By-SA 3.0 (http://creativecommons.org/licenses/by-sa/3.0/) +:License: CC By-SA 3.0 (https://creativecommons.org/licenses/by-sa/3.0/) :Date: 2011-06-23 :Status: Deferred @@ -224,7 +224,7 @@ but with semantics reflecting its status as a missing value. In particular, trying to treat it as a boolean will raise an exception, and comparisons with it will produce numpy.NA instead of True or False. These basics are adopted from the behavior of the NA value in the R project. To dig -deeper into the ideas, http://en.wikipedia.org/wiki/Ternary_logic#Kleene_logic +deeper into the ideas, https://en.wikipedia.org/wiki/Ternary_logic#Kleene_logic provides a starting point. For example,:: @@ -857,7 +857,7 @@ Shared Masks One feature of numpy.ma is called 'shared masks'. -http://docs.scipy.org/doc/numpy/reference/maskedarray.baseclass.html#numpy.ma.MaskedArray.sharedmask +https://docs.scipy.org/doc/numpy/reference/maskedarray.baseclass.html#numpy.ma.MaskedArray.sharedmask This feature cannot be supported by a masked implementation of missing values without directly violating the missing value abstraction. @@ -888,7 +888,7 @@ found from doing google searches of numpy C API array access. NumPy Documentation - How to extend NumPy ----------------------------------------- -http://docs.scipy.org/doc/numpy/user/c-info.how-to-extend.html#dealing-with-array-objects +https://docs.scipy.org/doc/numpy/user/c-info.how-to-extend.html#dealing-with-array-objects This page has a section "Dealing with array objects" which has some advice for how to access numpy arrays from C. When accepting arrays, the first step it suggests is @@ -898,7 +898,7 @@ advice will properly fail when given an NA-masked array it doesn't know how to h The way this is handled is that PyArray_FromAny requires a special flag, NPY_ARRAY_ALLOWNA, before it will allow NA-masked arrays to flow through. -http://docs.scipy.org/doc/numpy/reference/c-api.array.html#NPY_ARRAY_ALLOWNA +https://docs.scipy.org/doc/numpy/reference/c-api.array.html#NPY_ARRAY_ALLOWNA Code which does not follow this advice, and instead just calls PyArray_Check() to verify its an ndarray and checks some flags, will silently produce incorrect results. This style diff --git a/doc/neps/nep-0013-ufunc-overrides.rst b/doc/neps/nep-0013-ufunc-overrides.rst index c97b69023d19..61e2ceea9f1d 100644 --- a/doc/neps/nep-0013-ufunc-overrides.rst +++ b/doc/neps/nep-0013-ufunc-overrides.rst @@ -53,7 +53,7 @@ changes in 3rd party code. .. [1] http://docs.python.org/doc/numpy/user/basics.subclassing.html .. [2] https://github.com/scipy/scipy/issues/2123 .. [3] https://github.com/scipy/scipy/issues/1569 -.. [4] http://technicaldiscovery.blogspot.com/2013/07/thoughts-after-scipy-2013-and-specific.html +.. [4] https://technicaldiscovery.blogspot.com/2013/07/thoughts-after-scipy-2013-and-specific.html Motivation @@ -134,7 +134,7 @@ which have multiplication semantics incompatible with numpy arrays. However, the aim is to enable writing other custom array types that have strictly ndarray compatible semantics. -.. [5] http://mail.python.org/pipermail/numpy-discussion/2011-June/056945.html +.. [5] https://mail.python.org/pipermail/numpy-discussion/2011-June/056945.html .. [6] https://github.com/numpy/numpy/issues/5844 @@ -635,7 +635,7 @@ simplify the dispatch logic for binary operations with NumPy arrays as much as possible, by making it possible to use Python's dispatch rules or NumPy's dispatch rules, but not some mixture of both at the same time. -.. [9] http://bugs.python.org/issue30140 +.. [9] https://bugs.python.org/issue30140 .. _neps.ufunc-overrides.list-of-operators: diff --git a/doc/neps/nep-0014-dropping-python2.7-proposal.rst b/doc/neps/nep-0014-dropping-python2.7-proposal.rst index 6cfd4707fc6c..158b89e1cf8d 100644 --- a/doc/neps/nep-0014-dropping-python2.7-proposal.rst +++ b/doc/neps/nep-0014-dropping-python2.7-proposal.rst @@ -50,6 +50,6 @@ to Python3 only, see the python3-statement_. For more information on porting your code to run on Python 3, see the python3-howto_. -.. _python3-statement: http://www.python3statement.org/ +.. _python3-statement: https://python3statement.org/ .. _python3-howto: https://docs.python.org/3/howto/pyporting.html diff --git a/doc/neps/nep-0018-array-function-protocol.rst b/doc/neps/nep-0018-array-function-protocol.rst index f42da2f88c5c..3e2f5f57fe8b 100644 --- a/doc/neps/nep-0018-array-function-protocol.rst +++ b/doc/neps/nep-0018-array-function-protocol.rst @@ -197,7 +197,7 @@ are valid then which has precedence? For the most part, the rules for dispatch with ``__array_function__`` match those for ``__array_ufunc__`` (see -`NEP-13 `_). +`NEP-13 `_). In particular: - NumPy will gather implementations of ``__array_function__`` from all diff --git a/doc/neps/nep-template.rst b/doc/neps/nep-template.rst index 26515127dd48..e869ebae3509 100644 --- a/doc/neps/nep-template.rst +++ b/doc/neps/nep-template.rst @@ -64,7 +64,7 @@ References and Footnotes .. [1] Each NEP must either be explicitly labeled as placed in the public domain (see this NEP as an example) or licensed under the `Open Publication License`_. -.. _Open Publication License: http://www.opencontent.org/openpub/ +.. _Open Publication License: https://www.opencontent.org/openpub/ Copyright diff --git a/doc/release/1.3.0-notes.rst b/doc/release/1.3.0-notes.rst index 3ec93e0b0e39..2397142460d2 100644 --- a/doc/release/1.3.0-notes.rst +++ b/doc/release/1.3.0-notes.rst @@ -14,7 +14,7 @@ Python 2.6 support Python 2.6 is now supported on all previously supported platforms, including windows. -http://www.python.org/dev/peps/pep-0361/ +https://www.python.org/dev/peps/pep-0361/ Generalized ufuncs ------------------ @@ -235,7 +235,7 @@ This should make the porting to new platforms easier, and more robust. In particular, the configuration stage does not need to execute any code on the target platform, which is a first step toward cross-compilation. -http://numpy.github.io/neps/math_config_clean.html +https://www.numpy.org/neps/nep-0003-math_config_clean.html umath refactor -------------- @@ -247,7 +247,7 @@ Improvements to build warnings Numpy can now build with -W -Wall without warnings -http://numpy.github.io/neps/warnfix.html +https://www.numpy.org/neps/nep-0002-warnfix.html Separate core math library -------------------------- diff --git a/doc/release/1.7.0-notes.rst b/doc/release/1.7.0-notes.rst index 72aab4d4f174..09e6924e6bee 100644 --- a/doc/release/1.7.0-notes.rst +++ b/doc/release/1.7.0-notes.rst @@ -101,7 +101,7 @@ to NumPy 1.6: The notes in `doc/source/reference/arrays.datetime.rst `_ (also available in the online docs at `arrays.datetime.html -`_) should be +`_) should be consulted for more details. Custom formatter for printing arrays diff --git a/doc/release/time_based_proposal.rst b/doc/release/time_based_proposal.rst index 555be68633ad..2eb13562dcb7 100644 --- a/doc/release/time_based_proposal.rst +++ b/doc/release/time_based_proposal.rst @@ -123,7 +123,7 @@ References * Proposed schedule for Gnome from Havoc Pennington (one of the core GTK and Gnome manager): - http://mail.gnome.org/archives/gnome-hackers/2002-June/msg00041.html + https://mail.gnome.org/archives/gnome-hackers/2002-June/msg00041.html The proposed schedule is heavily based on this email - * http://live.gnome.org/ReleasePlanning/Freezes + * https://wiki.gnome.org/ReleasePlanning/Freezes diff --git a/doc/source/_templates/indexcontent.html b/doc/source/_templates/indexcontent.html index fbd8930ae39e..008eaaa7c576 100644 --- a/doc/source/_templates/indexcontent.html +++ b/doc/source/_templates/indexcontent.html @@ -36,7 +36,7 @@

Reporting bugs

About NumPy

-

+

NumPy Enhancement Proposals

Release Notes

diff --git a/doc/source/_templates/indexsidebar.html b/doc/source/_templates/indexsidebar.html index 9edb003affc8..51e7c43084ef 100644 --- a/doc/source/_templates/indexsidebar.html +++ b/doc/source/_templates/indexsidebar.html @@ -1,4 +1,4 @@

Resources

diff --git a/doc/source/about.rst b/doc/source/about.rst index 776488ea4a89..cc3dd46b9962 100644 --- a/doc/source/about.rst +++ b/doc/source/about.rst @@ -32,13 +32,13 @@ even better, contact us and participate in fixing the problem. Our main means of communication are: -- `scipy.org website `__ +- `scipy.org website `__ -- `Mailing lists `__ +- `Mailing lists `__ - `NumPy Issues `__ (bug reports go here) -- `Old NumPy Trac `__ (no longer used) +- `Old NumPy Trac `__ (dead link) More information about the development of NumPy can be found at our `Developer Zone `__. diff --git a/doc/source/bugs.rst b/doc/source/bugs.rst index 950934b14dcf..304a4136a4a1 100644 --- a/doc/source/bugs.rst +++ b/doc/source/bugs.rst @@ -5,7 +5,7 @@ Reporting bugs File bug reports or feature requests, and make contributions (e.g. code patches), by opening a "new issue" on GitHub: -- NumPy Issues: http://github.com/numpy/numpy/issues +- NumPy Issues: https://github.com/numpy/numpy/issues Please give as much information as you can in the ticket. It is extremely useful if you can supply a small self-contained code snippet that reproduces @@ -15,5 +15,5 @@ the milestone. Report bugs to the appropriate GitHub project (there is one for NumPy and a different one for SciPy). -More information can be found on the http://scipy.org/Developer_Zone -website. +More information can be found on the +https://www.scipy.org/scipylib/dev-zone.html website. diff --git a/doc/source/conf.py b/doc/source/conf.py index 1472f5155ca8..93a5ea01e6c9 100644 --- a/doc/source/conf.py +++ b/doc/source/conf.py @@ -104,8 +104,8 @@ def setup(app): "edit_link": True, "sidebar": "right", "scipy_org_logo": True, - "rootlinks": [("http://scipy.org/", "Scipy.org"), - ("http://docs.scipy.org/", "Docs")] + "rootlinks": [("https://scipy.org/", "Scipy.org"), + ("https://docs.scipy.org/", "Docs")] } else: # Default build @@ -341,8 +341,8 @@ def linkcode_resolve(domain, info): fn = relpath(fn, start=dirname(numpy.__file__)) if 'dev' in numpy.__version__: - return "http://github.com/numpy/numpy/blob/master/numpy/%s%s" % ( + return "https://github.com/numpy/numpy/blob/master/numpy/%s%s" % ( fn, linespec) else: - return "http://github.com/numpy/numpy/blob/v%s/numpy/%s%s" % ( + return "https://github.com/numpy/numpy/blob/v%s/numpy/%s%s" % ( numpy.__version__, fn, linespec) diff --git a/doc/source/dev/gitwash/development_workflow.rst b/doc/source/dev/gitwash/development_workflow.rst index c6884a7cfb37..9561e25f7da3 100644 --- a/doc/source/dev/gitwash/development_workflow.rst +++ b/doc/source/dev/gitwash/development_workflow.rst @@ -374,7 +374,7 @@ Deleting a branch on github_ git push origin :my-unwanted-branch (Note the colon ``:`` before ``test-branch``. See also: -http://github.com/guides/remove-a-remote-branch +https://github.com/guides/remove-a-remote-branch Several people sharing a single repository @@ -387,7 +387,7 @@ share it via github_. First fork NumPy into your account, as from :ref:`forking`. Then, go to your forked repository github page, say -``http://github.com/your-user-name/numpy`` +``https://github.com/your-user-name/numpy`` Click on the 'Admin' button, and add anyone else to the repo as a collaborator: diff --git a/doc/source/dev/gitwash/git_links.inc b/doc/source/dev/gitwash/git_links.inc index 30532da99b43..cebbb3a6789e 100644 --- a/doc/source/dev/gitwash/git_links.inc +++ b/doc/source/dev/gitwash/git_links.inc @@ -9,57 +9,57 @@ nipy, NIPY, Nipy, etc... .. git stuff -.. _git: http://git-scm.com/ -.. _github: http://github.com -.. _github help: http://help.github.com -.. _msysgit: http://code.google.com/p/msysgit/downloads/list -.. _git-osx-installer: http://code.google.com/p/git-osx-installer/downloads/list +.. _git: https://git-scm.com/ +.. _github: https://github.com +.. _github help: https://help.github.com +.. _msysgit: https://code.google.com/p/msysgit/downloads/list +.. _git-osx-installer: https://code.google.com/p/git-osx-installer/downloads/list .. _subversion: http://subversion.tigris.org/ -.. _git cheat sheet: http://github.com/guides/git-cheat-sheet -.. _pro git book: http://progit.org/ -.. _git svn crash course: http://git-scm.com/course/svn.html -.. _learn.github: http://learn.github.com/ -.. _network graph visualizer: http://github.com/blog/39-say-hello-to-the-network-graph-visualizer -.. _git user manual: http://www.kernel.org/pub/software/scm/git/docs/user-manual.html -.. _git tutorial: http://www.kernel.org/pub/software/scm/git/docs/gittutorial.html -.. _git community book: http://book.git-scm.com/ +.. _git cheat sheet: http://cheat.errtheblog.com/s/git +.. _pro git book: https://git-scm.com/book/ +.. _git svn crash course: https://git-scm.com/course/svn.html +.. _learn.github: https://learn.github.com/ +.. _network graph visualizer: https://github.com/blog/39-say-hello-to-the-network-graph-visualizer +.. _git user manual: https://www.kernel.org/pub/software/scm/git/docs/user-manual.html +.. _git tutorial: https://www.kernel.org/pub/software/scm/git/docs/gittutorial.html +.. _git community book: https://book.git-scm.com/ .. _git ready: http://www.gitready.com/ .. _git casts: http://www.gitcasts.com/ .. _Fernando's git page: http://www.fperez.org/py4science/git.html .. _git magic: http://www-cs-students.stanford.edu/~blynn/gitmagic/index.html .. _git concepts: http://www.eecs.harvard.edu/~cduan/technical/git/ -.. _git clone: http://www.kernel.org/pub/software/scm/git/docs/git-clone.html -.. _git checkout: http://www.kernel.org/pub/software/scm/git/docs/git-checkout.html -.. _git commit: http://www.kernel.org/pub/software/scm/git/docs/git-commit.html -.. _git push: http://www.kernel.org/pub/software/scm/git/docs/git-push.html -.. _git pull: http://www.kernel.org/pub/software/scm/git/docs/git-pull.html -.. _git add: http://www.kernel.org/pub/software/scm/git/docs/git-add.html -.. _git status: http://www.kernel.org/pub/software/scm/git/docs/git-status.html -.. _git diff: http://www.kernel.org/pub/software/scm/git/docs/git-diff.html -.. _git log: http://www.kernel.org/pub/software/scm/git/docs/git-log.html -.. _git branch: http://www.kernel.org/pub/software/scm/git/docs/git-branch.html -.. _git remote: http://www.kernel.org/pub/software/scm/git/docs/git-remote.html -.. _git config: http://www.kernel.org/pub/software/scm/git/docs/git-config.html +.. _git clone: https://www.kernel.org/pub/software/scm/git/docs/git-clone.html +.. _git checkout: https://www.kernel.org/pub/software/scm/git/docs/git-checkout.html +.. _git commit: https://www.kernel.org/pub/software/scm/git/docs/git-commit.html +.. _git push: https://www.kernel.org/pub/software/scm/git/docs/git-push.html +.. _git pull: https://www.kernel.org/pub/software/scm/git/docs/git-pull.html +.. _git add: https://www.kernel.org/pub/software/scm/git/docs/git-add.html +.. _git status: https://www.kernel.org/pub/software/scm/git/docs/git-status.html +.. _git diff: https://www.kernel.org/pub/software/scm/git/docs/git-diff.html +.. _git log: https://www.kernel.org/pub/software/scm/git/docs/git-log.html +.. _git branch: https://www.kernel.org/pub/software/scm/git/docs/git-branch.html +.. _git remote: https://www.kernel.org/pub/software/scm/git/docs/git-remote.html +.. _git config: https://www.kernel.org/pub/software/scm/git/docs/git-config.html .. _why the -a flag?: http://www.gitready.com/beginner/2009/01/18/the-staging-area.html .. _git staging area: http://www.gitready.com/beginner/2009/01/18/the-staging-area.html -.. _tangled working copy problem: http://tomayko.com/writings/the-thing-about-git +.. _tangled working copy problem: https://tomayko.com/writings/the-thing-about-git .. _git management: http://kerneltrap.org/Linux/Git_Management -.. _linux git workflow: http://www.mail-archive.com/dri-devel@lists.sourceforge.net/msg39091.html +.. _linux git workflow: https://www.mail-archive.com/dri-devel@lists.sourceforge.net/msg39091.html .. _ipython git workflow: http://mail.python.org/pipermail/ipython-dev/2010-October/006746.html .. _git parable: http://tom.preston-werner.com/2009/05/19/the-git-parable.html .. _git foundation: http://matthew-brett.github.com/pydagogue/foundation.html .. _numpy/master: https://github.com/numpy/numpy .. _git cherry-pick: https://www.kernel.org/pub/software/scm/git/docs/git-cherry-pick.html .. _git blame: https://www.kernel.org/pub/software/scm/git/docs/git-blame.html -.. _this blog post: http://github.com/blog/612-introducing-github-compare-view -.. _this article on merging conflicts: http://git-scm.com/book/en/Git-Branching-Basic-Branching-and-Merging#Basic-Merge-Conflicts +.. _this blog post: https://github.com/blog/612-introducing-github-compare-view +.. _this article on merging conflicts: https://git-scm.com/book/en/Git-Branching-Basic-Branching-and-Merging#Basic-Merge-Conflicts .. _learn git: https://www.atlassian.com/git/tutorials/ .. _filing pull requests: https://help.github.com/articles/using-pull-requests/#initiating-the-pull-request .. _pull request review: https://help.github.com/articles/using-pull-requests/#reviewing-the-pull-request .. other stuff -.. _python: http://www.python.org -.. _NumPy: http://www.numpy.org -.. _`NumPy github`: http://github.com/numpy/numpy -.. _`NumPy mailing list`: http://scipy.org/Mailing_Lists +.. _python: https://www.python.org +.. _NumPy: https://www.numpy.org +.. _`NumPy github`: https://github.com/numpy/numpy +.. _`NumPy mailing list`: https://scipy.org/scipylib/mailing-lists.html diff --git a/doc/source/dev/gitwash_links.txt b/doc/source/dev/gitwash_links.txt index f9536828c604..36ca0b65f440 100644 --- a/doc/source/dev/gitwash_links.txt +++ b/doc/source/dev/gitwash_links.txt @@ -1,3 +1,3 @@ -.. _NumPy: http://www.numpy.org -.. _`NumPy github`: http://github.com/numpy/numpy -.. _`NumPy mailing list`: http://scipy.org/Mailing_Lists +.. _NumPy: https://www.numpy.org +.. _`NumPy github`: https://github.com/numpy/numpy +.. _`NumPy mailing list`: https://scipy.org/scipylib/mailing-lists.html diff --git a/doc/source/docs/howto_build_docs.rst b/doc/source/docs/howto_build_docs.rst index 383bed96d1c2..cdf490c373f0 100644 --- a/doc/source/docs/howto_build_docs.rst +++ b/doc/source/docs/howto_build_docs.rst @@ -10,11 +10,11 @@ documentation for NumPy. You will need Sphinx 1.0.1 or newer. If you only want to get the documentation, note that pre-built versions can be found at - http://docs.scipy.org/ + https://docs.scipy.org/ in several different formats. -.. _Sphinx: http://sphinx.pocoo.org +.. _Sphinx: http://www.sphinx-doc.org/ Instructions @@ -66,11 +66,11 @@ which will rebuild NumPy, install it to a temporary location, and build the documentation in all formats. This will most likely again only work on Unix platforms. -The documentation for NumPy distributed at http://docs.scipy.org in html and +The documentation for NumPy distributed at https://docs.scipy.org in html and pdf format is also built with ``make dist``. See `HOWTO RELEASE`_ for details on -how to update http://docs.scipy.org. +how to update https://docs.scipy.org. -.. _Matplotlib: http://matplotlib.org/ +.. _Matplotlib: https://matplotlib.org/ .. _HOWTO RELEASE: https://github.com/numpy/numpy/blob/master/doc/HOWTO_RELEASE.rst.txt Sphinx extensions @@ -83,5 +83,5 @@ above), and are automatically enabled when building NumPy's documentation. If you want to make use of these extensions in third-party projects, they are available on PyPi_ as the numpydoc_ package. -.. _PyPi: http://python.org/pypi -.. _numpydoc: http://python.org/pypi/numpydoc +.. _PyPi: https://pypi.org/ +.. _numpydoc: https://python.org/pypi/numpydoc diff --git a/doc/source/docs/howto_document.rst b/doc/source/docs/howto_document.rst index de7d06cf8ece..2a97a100d8e6 100644 --- a/doc/source/docs/howto_document.rst +++ b/doc/source/docs/howto_document.rst @@ -4,7 +4,7 @@ A Guide to NumPy/SciPy Documentation ==================================== -When using `Sphinx `__ in combination with the +When using `Sphinx `__ in combination with the numpy conventions, you should use the ``numpydoc`` extension so that your docstrings will be handled correctly. For example, Sphinx will extract the ``Parameters`` section from your docstring and convert it into a field @@ -19,7 +19,7 @@ Some features described in this document require a recent version of It is available from: -* `numpydoc on PyPI `_ +* `numpydoc on PyPI `_ * `numpydoc on GitHub `_ Note that for documentation within numpy, it is not necessary to do diff --git a/doc/source/f2py/index.rst b/doc/source/f2py/index.rst index 8b7d1453a041..d6773a76f77e 100644 --- a/doc/source/f2py/index.rst +++ b/doc/source/f2py/index.rst @@ -26,6 +26,5 @@ from Python. distutils advanced -.. _Python: http://www.python.org/ -.. _NumPy: http://www.numpy.org/ -.. _SciPy: http://www.numpy.org/ +.. _Python: https://www.python.org/ +.. _NumPy: https://www.numpy.org/ diff --git a/doc/source/f2py/signature-file.rst b/doc/source/f2py/signature-file.rst index bd926f33c705..8e5a9710cbe4 100644 --- a/doc/source/f2py/signature-file.rst +++ b/doc/source/f2py/signature-file.rst @@ -303,7 +303,7 @@ Other statements: ``pymethoddef`` statement can be used only inside ``python module`` block. - __ http://www.python.org/doc/current/ext/ext.html + __ https://docs.python.org/extending/index.html Attributes ------------ diff --git a/doc/source/reference/arrays.interface.rst b/doc/source/reference/arrays.interface.rst index 4a5fe62bf3e3..f361ccb062cb 100644 --- a/doc/source/reference/arrays.interface.rst +++ b/doc/source/reference/arrays.interface.rst @@ -22,7 +22,7 @@ The Array Interface described here. __ http://cython.org/ -__ http://wiki.cython.org/tutorials/numpy +__ https://github.com/cython/cython/wiki/tutorials-numpy :version: 3 diff --git a/doc/source/reference/c-api.coremath.rst b/doc/source/reference/c-api.coremath.rst index ad92235da623..82d24853933a 100644 --- a/doc/source/reference/c-api.coremath.rst +++ b/doc/source/reference/c-api.coremath.rst @@ -297,10 +297,10 @@ External Links: * `OpenGL Half Float Pixel Support`__ * `The OpenEXR image format`__. -__ http://ieeexplore.ieee.org/servlet/opac?punumber=4610933 -__ http://en.wikipedia.org/wiki/Half_precision_floating-point_format -__ http://www.opengl.org/registry/specs/ARB/half_float_pixel.txt -__ http://www.openexr.com/about.html +__ https://ieeexplore.ieee.org/document/4610935/ +__ https://en.wikipedia.org/wiki/Half-precision_floating-point_format +__ https://www.khronos.org/registry/OpenGL/extensions/ARB/ARB_half_float_pixel.txt +__ https://www.openexr.com/about.html .. c:var:: NPY_HALF_ZERO diff --git a/doc/source/user/building.rst b/doc/source/user/building.rst index 76eb48487a91..d224951dd5db 100644 --- a/doc/source/user/building.rst +++ b/doc/source/user/building.rst @@ -16,7 +16,7 @@ Building NumPy requires the following software installed: On Debian and derivatives (Ubuntu): python, python-dev (or python3-dev) On Windows: the official python installer at - `www.python.org `_ is enough + `www.python.org `_ is enough Make sure that the Python package distutils is installed before continuing. For example, in Debian GNU/Linux, installing python-dev diff --git a/doc/source/user/c-info.beyond-basics.rst b/doc/source/user/c-info.beyond-basics.rst index 5c321088d2f5..aee68f6e7205 100644 --- a/doc/source/user/c-info.beyond-basics.rst +++ b/doc/source/user/c-info.beyond-basics.rst @@ -481,7 +481,7 @@ type(s). In particular, to create a sub-type in C follow these steps: module dictionary so it can be accessed from Python. More information on creating sub-types in C can be learned by reading -PEP 253 (available at http://www.python.org/dev/peps/pep-0253). +PEP 253 (available at https://www.python.org/dev/peps/pep-0253). Specific features of ndarray sub-typing diff --git a/doc/source/user/c-info.how-to-extend.rst b/doc/source/user/c-info.how-to-extend.rst index 22c3b6e90041..9738168d27e8 100644 --- a/doc/source/user/c-info.how-to-extend.rst +++ b/doc/source/user/c-info.how-to-extend.rst @@ -36,7 +36,7 @@ into Python as if it were a standard python file. It will contain objects and methods that have been defined and compiled in C code. The basic steps for doing this in Python are well-documented and you can find more information in the documentation for Python itself available -online at `www.python.org `_ . +online at `www.python.org `_ . In addition to the Python C-API, there is a full and rich C-API for NumPy allowing sophisticated manipulations on a C-level. However, for diff --git a/doc/source/user/c-info.python-as-glue.rst b/doc/source/user/c-info.python-as-glue.rst index 0152ac549fc6..750fdddf0395 100644 --- a/doc/source/user/c-info.python-as-glue.rst +++ b/doc/source/user/c-info.python-as-glue.rst @@ -405,8 +405,8 @@ interface between Python and Fortran. There is decent documentation for f2py found in the numpy/f2py/docs directory where-ever NumPy is installed on your system (usually under site-packages). There is also more information on using f2py (including how to use it to wrap C -codes) at http://www.scipy.org/Cookbook under the "Using NumPy with -Other Languages" heading. +codes) at https://scipy-cookbook.readthedocs.io under the "Interfacing +With Other Languages" heading. The f2py method of linking compiled code is currently the most sophisticated and integrated approach. It allows clean separation of diff --git a/doc/source/user/c-info.ufunc-tutorial.rst b/doc/source/user/c-info.ufunc-tutorial.rst index 5818ff182272..788a3429f0a2 100644 --- a/doc/source/user/c-info.ufunc-tutorial.rst +++ b/doc/source/user/c-info.ufunc-tutorial.rst @@ -17,7 +17,7 @@ Creating a new universal function Before reading this, it may help to familiarize yourself with the basics of C extensions for Python by reading/skimming the tutorials in Section 1 of `Extending and Embedding the Python Interpreter -`_ and in :doc:`How to extend +`_ and in :doc:`How to extend NumPy ` The umath module is a computer-generated C-module that creates many diff --git a/doc/source/user/install.rst b/doc/source/user/install.rst index dd75436458cd..52586f3d7d6a 100644 --- a/doc/source/user/install.rst +++ b/doc/source/user/install.rst @@ -4,7 +4,7 @@ Installing NumPy In most use cases the best way to install NumPy on your system is by using a pre-built package for your operating system. Please see -http://scipy.org/install.html for links to available options. +https://scipy.org/install.html for links to available options. For instructions on building for source package, see :doc:`building`. This information is useful mainly for advanced users. diff --git a/doc/source/user/numpy-for-matlab-users.rst b/doc/source/user/numpy-for-matlab-users.rst index 475c68c04aab..399237c213fb 100644 --- a/doc/source/user/numpy-for-matlab-users.rst +++ b/doc/source/user/numpy-for-matlab-users.rst @@ -618,9 +618,9 @@ initial element of a sequence has index 0. Confusion and flamewars arise because each has advantages and disadvantages. One based indexing is consistent with common human language usage, where the "first" element of a sequence has index 1. Zero based indexing `simplifies -indexing `__. +indexing `__. See also `a text by prof.dr. Edsger W. -Dijkstra `__. +Dijkstra `__. \ **RANGES**: In MATLAB®, ``0:5`` can be used as both a range literal and a 'slice' index (inside parentheses); however, in Python, constructs @@ -715,6 +715,6 @@ See http://mathesaurus.sf.net/ for another MATLAB®/NumPy cross-reference. An extensive list of tools for scientific work with python can be -found in the `topical software page `__. +found in the `topical software page `__. MATLAB® and SimuLink® are registered trademarks of The MathWorks. diff --git a/doc/source/user/quickstart.rst b/doc/source/user/quickstart.rst index 57a7004cc547..5ef8b145f6be 100644 --- a/doc/source/user/quickstart.rst +++ b/doc/source/user/quickstart.rst @@ -14,11 +14,11 @@ Prerequisites Before reading this tutorial you should know a bit of Python. If you would like to refresh your memory, take a look at the `Python -tutorial `__. +tutorial `__. If you wish to work the examples in this tutorial, you must also have some software installed on your computer. Please see -http://scipy.org/install.html for instructions. +https://scipy.org/install.html for instructions. The Basics ========== @@ -569,7 +569,7 @@ first axis:: However, if one wants to perform an operation on each element in the array, one can use the ``flat`` attribute which is an -`iterator `__ +`iterator `__ over all the elements of the array:: >>> for element in b.flat: @@ -1191,7 +1191,7 @@ This property can be very useful in assignments:: You can look at the following example to see how to use boolean indexing to generate an image of the `Mandelbrot -set `__: +set `__: .. plot:: @@ -1462,8 +1462,8 @@ that ``pylab.hist`` plots the histogram automatically, while Further reading =============== -- The `Python tutorial `__ +- The `Python tutorial `__ - :ref:`reference` - `SciPy Tutorial `__ -- `SciPy Lecture Notes `__ +- `SciPy Lecture Notes `__ - A `matlab, R, IDL, NumPy/SciPy dictionary `__ diff --git a/numpy/__init__.py b/numpy/__init__.py index d250ed5ac53f..77b1d924d8c7 100644 --- a/numpy/__init__.py +++ b/numpy/__init__.py @@ -11,10 +11,10 @@ ---------------------------- Documentation is available in two forms: docstrings provided with the code, and a loose standing reference guide, available from -`the NumPy homepage `_. +`the NumPy homepage `_. We recommend exploring the docstrings using -`IPython `_, an advanced Python shell with +`IPython `_, an advanced Python shell with TAB-completion and introspection capabilities. See below for further instructions. diff --git a/numpy/add_newdocs.py b/numpy/add_newdocs.py index 9372b343137d..d87c964c2833 100644 --- a/numpy/add_newdocs.py +++ b/numpy/add_newdocs.py @@ -1452,7 +1452,7 @@ def luf(lamdaexpr, *args, **kwargs): Values are generated within the half-open interval ``[start, stop)`` (in other words, the interval including `start` but excluding `stop`). For integer arguments the function is equivalent to the Python built-in - `range `_ function, + `range `_ function, but returns an ndarray rather than a list. When using a non-integer step, such as 0.1, the results will often not diff --git a/numpy/core/code_generators/ufunc_docstrings.py b/numpy/core/code_generators/ufunc_docstrings.py index f7d58a26f452..73da9d12c24f 100644 --- a/numpy/core/code_generators/ufunc_docstrings.py +++ b/numpy/core/code_generators/ufunc_docstrings.py @@ -233,7 +233,7 @@ def add_newdoc(place, name, doc): .. [1] M. Abramowitz and I.A. Stegun, "Handbook of Mathematical Functions", 10th printing, 1964, pp. 86. http://www.math.sfu.ca/~cbm/aands/ .. [2] Wikipedia, "Inverse hyperbolic function", - http://en.wikipedia.org/wiki/Arccosh + https://en.wikipedia.org/wiki/Arccosh Examples -------- @@ -335,7 +335,7 @@ def add_newdoc(place, name, doc): .. [1] M. Abramowitz and I.A. Stegun, "Handbook of Mathematical Functions", 10th printing, 1964, pp. 86. http://www.math.sfu.ca/~cbm/aands/ .. [2] Wikipedia, "Inverse hyperbolic function", - http://en.wikipedia.org/wiki/Arcsinh + https://en.wikipedia.org/wiki/Arcsinh Examples -------- @@ -535,7 +535,7 @@ def add_newdoc(place, name, doc): .. [1] M. Abramowitz and I.A. Stegun, "Handbook of Mathematical Functions", 10th printing, 1964, pp. 86. http://www.math.sfu.ca/~cbm/aands/ .. [2] Wikipedia, "Inverse hyperbolic function", - http://en.wikipedia.org/wiki/Arctanh + https://en.wikipedia.org/wiki/Arctanh Examples -------- @@ -1136,7 +1136,7 @@ def add_newdoc(place, name, doc): References ---------- .. [1] Wikipedia, "Exponential function", - http://en.wikipedia.org/wiki/Exponential_function + https://en.wikipedia.org/wiki/Exponential_function .. [2] M. Abramovitz and I. A. Stegun, "Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Tables," Dover, 1964, p. 69, http://www.math.sfu.ca/~cbm/aands/page_69.htm @@ -1551,7 +1551,7 @@ def add_newdoc(place, name, doc): References ---------- .. [1] Wikipedia, "Two's complement", - http://en.wikipedia.org/wiki/Two's_complement + https://en.wikipedia.org/wiki/Two's_complement Examples -------- @@ -1912,7 +1912,7 @@ def add_newdoc(place, name, doc): ---------- .. [1] M. Abramowitz and I.A. Stegun, "Handbook of Mathematical Functions", 10th printing, 1964, pp. 67. http://www.math.sfu.ca/~cbm/aands/ - .. [2] Wikipedia, "Logarithm". http://en.wikipedia.org/wiki/Logarithm + .. [2] Wikipedia, "Logarithm". https://en.wikipedia.org/wiki/Logarithm Examples -------- @@ -1961,7 +1961,7 @@ def add_newdoc(place, name, doc): ---------- .. [1] M. Abramowitz and I.A. Stegun, "Handbook of Mathematical Functions", 10th printing, 1964, pp. 67. http://www.math.sfu.ca/~cbm/aands/ - .. [2] Wikipedia, "Logarithm". http://en.wikipedia.org/wiki/Logarithm + .. [2] Wikipedia, "Logarithm". https://en.wikipedia.org/wiki/Logarithm Examples -------- @@ -2147,7 +2147,7 @@ def add_newdoc(place, name, doc): ---------- .. [1] M. Abramowitz and I.A. Stegun, "Handbook of Mathematical Functions", 10th printing, 1964, pp. 67. http://www.math.sfu.ca/~cbm/aands/ - .. [2] Wikipedia, "Logarithm". http://en.wikipedia.org/wiki/Logarithm + .. [2] Wikipedia, "Logarithm". https://en.wikipedia.org/wiki/Logarithm Examples -------- @@ -3578,7 +3578,7 @@ def add_newdoc(place, name, doc): http://www.math.sfu.ca/~cbm/aands/ .. [2] Wikipedia, "Hyperbolic function", - http://en.wikipedia.org/wiki/Hyperbolic_function + https://en.wikipedia.org/wiki/Hyperbolic_function Examples -------- diff --git a/numpy/core/fromnumeric.py b/numpy/core/fromnumeric.py index d1aae0aa0147..5b67a0dc54f6 100644 --- a/numpy/core/fromnumeric.py +++ b/numpy/core/fromnumeric.py @@ -2777,11 +2777,11 @@ def around(a, decimals=0, out=None): References ---------- - .. [1] "Lecture Notes on the Status of IEEE 754", William Kahan, - http://www.cs.berkeley.edu/~wkahan/ieee754status/IEEE754.PDF + .. [1] "Lecture Notes on the Status of IEEE 754", William Kahan, + https://people.eecs.berkeley.edu/~wkahan/ieee754status/IEEE754.PDF .. [2] "How Futile are Mindless Assessments of Roundoff in Floating-Point Computation?", William Kahan, - http://www.cs.berkeley.edu/~wkahan/Mindless.pdf + https://people.eecs.berkeley.edu/~wkahan/Mindless.pdf Examples -------- diff --git a/numpy/core/include/numpy/ndarraytypes.h b/numpy/core/include/numpy/ndarraytypes.h index cf73cecea6d3..ec2893b21a1b 100644 --- a/numpy/core/include/numpy/ndarraytypes.h +++ b/numpy/core/include/numpy/ndarraytypes.h @@ -1759,7 +1759,7 @@ typedef struct { /************************************************************ * This is the form of the struct that's returned pointed by the * PyCObject attribute of an array __array_struct__. See - * http://docs.scipy.org/doc/numpy/reference/arrays.interface.html for the full + * https://docs.scipy.org/doc/numpy/reference/arrays.interface.html for the full * documentation. ************************************************************/ typedef struct { diff --git a/numpy/core/numeric.py b/numpy/core/numeric.py index 4ff12dbbd37b..106f0ccfe5bc 100644 --- a/numpy/core/numeric.py +++ b/numpy/core/numeric.py @@ -1010,7 +1010,8 @@ def convolve(a, v, mode='full'): References ---------- - .. [1] Wikipedia, "Convolution", http://en.wikipedia.org/wiki/Convolution. + .. [1] Wikipedia, "Convolution", + https://en.wikipedia.org/wiki/Convolution Examples -------- @@ -2015,7 +2016,7 @@ def binary_repr(num, width=None): References ---------- .. [1] Wikipedia, "Two's complement", - http://en.wikipedia.org/wiki/Two's_complement + https://en.wikipedia.org/wiki/Two's_complement Examples -------- @@ -2538,7 +2539,7 @@ def seterr(all=None, divide=None, over=None, under=None, invalid=None): - Invalid operation: result is not an expressible number, typically indicates that a NaN was produced. - .. [1] http://en.wikipedia.org/wiki/IEEE_754 + .. [1] https://en.wikipedia.org/wiki/IEEE_754 Examples -------- diff --git a/numpy/core/src/multiarray/datetime_strings.c b/numpy/core/src/multiarray/datetime_strings.c index 4f9d8fa41682..95b7bb3dcc15 100644 --- a/numpy/core/src/multiarray/datetime_strings.c +++ b/numpy/core/src/multiarray/datetime_strings.c @@ -69,7 +69,7 @@ * multiplatform code, get_localtime() should never be used outside of this * range. * - * [1] http://en.wikipedia.org/wiki/Year_2038_problem + * [1] https://en.wikipedia.org/wiki/Year_2038_problem */ static int get_localtime(NPY_TIME_T *ts, struct tm *tms) diff --git a/numpy/core/tests/test_deprecations.py b/numpy/core/tests/test_deprecations.py index 60a7c72f7f41..285b2de3c663 100644 --- a/numpy/core/tests/test_deprecations.py +++ b/numpy/core/tests/test_deprecations.py @@ -36,7 +36,7 @@ def setup(self): # Do *not* ignore other DeprecationWarnings. Ignoring warnings # can give very confusing results because of - # http://bugs.python.org/issue4180 and it is probably simplest to + # https://bugs.python.org/issue4180 and it is probably simplest to # try to keep the tests cleanly giving only the right warning type. # (While checking them set to "error" those are ignored anyway) # We still have them show up, because otherwise they would be raised @@ -414,7 +414,7 @@ class TestClassicIntDivision(_DeprecationTestCase): """ See #7949. Deprecate the numeric-style dtypes with -3 flag in python 2 if used for division - List of data types: http://docs.scipy.org/doc/numpy/user/basics.types.html + List of data types: https://docs.scipy.org/doc/numpy/user/basics.types.html """ def test_int_dtypes(self): #scramble types and do some mix and match testing diff --git a/numpy/core/tests/test_multiarray.py b/numpy/core/tests/test_multiarray.py index 37d73e42c3b7..e85a73154d0f 100644 --- a/numpy/core/tests/test_multiarray.py +++ b/numpy/core/tests/test_multiarray.py @@ -44,7 +44,7 @@ if sys.version_info[:2] > (3, 2): # In Python 3.3 the representation of empty shape, strides and sub-offsets # is an empty tuple instead of None. - # http://docs.python.org/dev/whatsnew/3.3.html#api-changes + # https://docs.python.org/dev/whatsnew/3.3.html#api-changes EMPTY = () else: EMPTY = None diff --git a/numpy/core/tests/test_scalarmath.py b/numpy/core/tests/test_scalarmath.py index ff370c411045..a55f06b693bd 100644 --- a/numpy/core/tests/test_scalarmath.py +++ b/numpy/core/tests/test_scalarmath.py @@ -519,7 +519,7 @@ def _test_type_repr(self, t): storage_bytes = np.dtype(t).itemsize*8 # could add some more types to the list below for which in ['small denorm', 'small norm']: - # Values from http://en.wikipedia.org/wiki/IEEE_754 + # Values from https://en.wikipedia.org/wiki/IEEE_754 constr = np.array([0x00]*storage_bytes, dtype=np.uint8) if which == 'small denorm': byte = last_fraction_bit_idx // 8 diff --git a/numpy/ctypeslib.py b/numpy/ctypeslib.py index 9d71adbdb6f6..329c7a280ca6 100644 --- a/numpy/ctypeslib.py +++ b/numpy/ctypeslib.py @@ -12,7 +12,7 @@ References ---------- -.. [1] "SciPy Cookbook: ctypes", http://www.scipy.org/Cookbook/Ctypes +.. [1] "SciPy Cookbook: ctypes", https://scipy-cookbook.readthedocs.io/items/Ctypes.html Examples -------- diff --git a/numpy/distutils/misc_util.py b/numpy/distutils/misc_util.py index 41f0b1f6154c..186ed949d863 100644 --- a/numpy/distutils/misc_util.py +++ b/numpy/distutils/misc_util.py @@ -257,7 +257,7 @@ def minrelpath(path): return os.sep.join(l) def sorted_glob(fileglob): - """sorts output of python glob for http://bugs.python.org/issue30461 + """sorts output of python glob for https://bugs.python.org/issue30461 to allow extensions to have reproducible build results""" return sorted(glob.glob(fileglob)) @@ -317,7 +317,7 @@ def make_temp_file(suffix='', prefix='', text=True): return fo, name # Hooks for colored terminal output. -# See also http://www.livinglogic.de/Python/ansistyle +# See also https://web.archive.org/web/20100314204946/http://www.livinglogic.de/Python/ansistyle def terminal_has_colors(): if sys.platform=='cygwin' and 'USE_COLOR' not in os.environ: # Avoid importing curses that causes illegal operation diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py index 65d7de3168bb..a5693bdd5592 100644 --- a/numpy/distutils/system_info.py +++ b/numpy/distutils/system_info.py @@ -487,7 +487,7 @@ class FFTWNotFoundError(NotFoundError): class DJBFFTNotFoundError(NotFoundError): """ - DJBFFT (http://cr.yp.to/djbfft.html) libraries not found. + DJBFFT (https://cr.yp.to/djbfft.html) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [djbfft]) or by setting the DJBFFT environment variable.""" @@ -495,7 +495,7 @@ class DJBFFTNotFoundError(NotFoundError): class NumericNotFoundError(NotFoundError): """ - Numeric (http://www.numpy.org/) module not found. + Numeric (https://www.numpy.org/) module not found. Get it from above location, install it, and retry setup.py.""" @@ -505,7 +505,7 @@ class X11NotFoundError(NotFoundError): class UmfpackNotFoundError(NotFoundError): """ - UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/) + UMFPACK sparse solver (https://www.cise.ufl.edu/research/sparse/umfpack/) not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [umfpack]) or by setting the UMFPACK environment variable.""" diff --git a/numpy/doc/broadcasting.py b/numpy/doc/broadcasting.py index 717914cda28c..1dc4f60bf554 100644 --- a/numpy/doc/broadcasting.py +++ b/numpy/doc/broadcasting.py @@ -171,7 +171,7 @@ making it a two-dimensional ``4x1`` array. Combining the ``4x1`` array with ``b``, which has shape ``(3,)``, yields a ``4x3`` array. -See `this article `_ +See `this article `_ for illustrations of broadcasting concepts. """ diff --git a/numpy/doc/glossary.py b/numpy/doc/glossary.py index 0e1df495bfee..a3b9423a8b06 100644 --- a/numpy/doc/glossary.py +++ b/numpy/doc/glossary.py @@ -69,7 +69,7 @@ micro-processors and used for transmission of data over network protocols. BLAS - `Basic Linear Algebra Subprograms `_ + `Basic Linear Algebra Subprograms `_ broadcast NumPy can do operations on arrays whose shapes are mismatched:: @@ -155,7 +155,7 @@ be used as keys. For more information on dictionaries, read the - `Python tutorial `_. + `Python tutorial `_. field In a :term:`structured data type`, each sub-type is called a `field`. @@ -238,7 +238,7 @@ [3, 4]]) For more information, read the section on lists in the `Python - tutorial `_. For a mapping + tutorial `_. For a mapping type (key-value), see *dictionary*. little-endian diff --git a/numpy/doc/misc.py b/numpy/doc/misc.py index 24369871c96e..a76abe164f33 100644 --- a/numpy/doc/misc.py +++ b/numpy/doc/misc.py @@ -209,7 +209,7 @@ Interfacing to Fortran: ----------------------- The clear choice to wrap Fortran code is -`f2py `_. +`f2py `_. Pyfort is an older alternative, but not supported any longer. Fwrap is a newer project that looked promising but isn't being developed any diff --git a/numpy/doc/subclassing.py b/numpy/doc/subclassing.py index 3be3d94b3a61..4b983893ad2a 100644 --- a/numpy/doc/subclassing.py +++ b/numpy/doc/subclassing.py @@ -108,7 +108,7 @@ ``__new__`` is a standard Python method, and, if present, is called before ``__init__`` when we create a class instance. See the `python __new__ documentation -`_ for more detail. +`_ for more detail. For example, consider the following Python code: diff --git a/numpy/dual.py b/numpy/dual.py index 8b91da262037..3a16a8ec517f 100644 --- a/numpy/dual.py +++ b/numpy/dual.py @@ -7,7 +7,7 @@ scipy is available but still support users who have only installed NumPy. -.. _Scipy : http://www.scipy.org +.. _Scipy : https://www.scipy.org """ from __future__ import division, absolute_import, print_function diff --git a/numpy/f2py/rules.py b/numpy/f2py/rules.py index 36e2222eac7b..23d36b2c2161 100644 --- a/numpy/f2py/rules.py +++ b/numpy/f2py/rules.py @@ -1452,7 +1452,7 @@ def buildapi(rout): ['\\begin{description}'] + rd[k][1:] +\ ['\\end{description}'] - # Workaround for Python 2.6, 2.6.1 bug: http://bugs.python.org/issue4720 + # Workaround for Python 2.6, 2.6.1 bug: https://bugs.python.org/issue4720 if rd['keyformat'] or rd['xaformat']: argformat = rd['argformat'] if isinstance(argformat, list): diff --git a/numpy/lib/format.py b/numpy/lib/format.py index 23eac7e7dafe..ef5ec57e397c 100644 --- a/numpy/lib/format.py +++ b/numpy/lib/format.py @@ -150,7 +150,7 @@ ----- The ``.npy`` format, including motivation for creating it and a comparison of alternatives, is described in the `"npy-format" NEP -`_, however details have +`_, however details have evolved with time and this document is more current. """ diff --git a/numpy/lib/function_base.py b/numpy/lib/function_base.py index 95edb95fa53a..128da22c6bd2 100644 --- a/numpy/lib/function_base.py +++ b/numpy/lib/function_base.py @@ -1649,7 +1649,7 @@ def disp(mesg, device=None, linefeed=True): return -# See http://docs.scipy.org/doc/numpy/reference/c-api.generalized-ufuncs.html +# See https://docs.scipy.org/doc/numpy/reference/c-api.generalized-ufuncs.html _DIMENSION_NAME = r'\w+' _CORE_DIMENSION_LIST = '(?:{0:}(?:,{0:})*)?'.format(_DIMENSION_NAME) _ARGUMENT = r'\({}\)'.format(_CORE_DIMENSION_LIST) @@ -1906,7 +1906,7 @@ class vectorize(object): References ---------- .. [1] NumPy Reference, section `Generalized Universal Function API - `_. + `_. """ def __init__(self, pyfunc, otypes=None, doc=None, excluded=None, @@ -2561,7 +2561,7 @@ def bartlett(M): .. [3] A.V. Oppenheim and R.W. Schafer, "Discrete-Time Signal Processing", Prentice-Hall, 1999, pp. 468-471. .. [4] Wikipedia, "Window function", - http://en.wikipedia.org/wiki/Window_function + https://en.wikipedia.org/wiki/Window_function .. [5] W.H. Press, B.P. Flannery, S.A. Teukolsky, and W.T. Vetterling, "Numerical Recipes", Cambridge University Press, 1986, page 429. @@ -2661,7 +2661,7 @@ def hanning(M): .. [2] E.R. Kanasewich, "Time Sequence Analysis in Geophysics", The University of Alberta Press, 1975, pp. 106-108. .. [3] Wikipedia, "Window function", - http://en.wikipedia.org/wiki/Window_function + https://en.wikipedia.org/wiki/Window_function .. [4] W.H. Press, B.P. Flannery, S.A. Teukolsky, and W.T. Vetterling, "Numerical Recipes", Cambridge University Press, 1986, page 425. @@ -2759,7 +2759,7 @@ def hamming(M): .. [2] E.R. Kanasewich, "Time Sequence Analysis in Geophysics", The University of Alberta Press, 1975, pp. 109-110. .. [3] Wikipedia, "Window function", - http://en.wikipedia.org/wiki/Window_function + https://en.wikipedia.org/wiki/Window_function .. [4] W.H. Press, B.P. Flannery, S.A. Teukolsky, and W.T. Vetterling, "Numerical Recipes", Cambridge University Press, 1986, page 425. @@ -3036,7 +3036,7 @@ def kaiser(M, beta): .. [2] E.R. Kanasewich, "Time Sequence Analysis in Geophysics", The University of Alberta Press, 1975, pp. 177-178. .. [3] Wikipedia, "Window function", - http://en.wikipedia.org/wiki/Window_function + https://en.wikipedia.org/wiki/Window_function Examples -------- @@ -3124,7 +3124,7 @@ def sinc(x): .. [1] Weisstein, Eric W. "Sinc Function." From MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/SincFunction.html .. [2] Wikipedia, "Sinc function", - http://en.wikipedia.org/wiki/Sinc_function + https://en.wikipedia.org/wiki/Sinc_function Examples -------- @@ -3840,10 +3840,10 @@ def trapz(y, x=None, dx=1.0, axis=-1): References ---------- - .. [1] Wikipedia page: http://en.wikipedia.org/wiki/Trapezoidal_rule + .. [1] Wikipedia page: https://en.wikipedia.org/wiki/Trapezoidal_rule .. [2] Illustration image: - http://en.wikipedia.org/wiki/File:Composite_trapezoidal_rule_illustration.png + https://en.wikipedia.org/wiki/File:Composite_trapezoidal_rule_illustration.png Examples -------- diff --git a/numpy/lib/npyio.py b/numpy/lib/npyio.py index 390927601fc2..7788ac319ed0 100644 --- a/numpy/lib/npyio.py +++ b/numpy/lib/npyio.py @@ -1259,8 +1259,8 @@ def savetxt(fname, X, fmt='%.18e', delimiter=' ', newline='\n', header='', References ---------- .. [1] `Format Specification Mini-Language - `_, Python Documentation. + `_, + Python Documentation. Examples -------- @@ -1624,7 +1624,7 @@ def genfromtxt(fname, dtype=float, comments='#', delimiter=None, References ---------- .. [1] NumPy User Guide, section `I/O with NumPy - `_. + `_. Examples --------- diff --git a/numpy/lib/polynomial.py b/numpy/lib/polynomial.py index 078608bbb04d..0e691f56e96e 100644 --- a/numpy/lib/polynomial.py +++ b/numpy/lib/polynomial.py @@ -494,9 +494,9 @@ def polyfit(x, y, deg, rcond=None, full=False, w=None, cov=False): References ---------- .. [1] Wikipedia, "Curve fitting", - http://en.wikipedia.org/wiki/Curve_fitting + https://en.wikipedia.org/wiki/Curve_fitting .. [2] Wikipedia, "Polynomial interpolation", - http://en.wikipedia.org/wiki/Polynomial_interpolation + https://en.wikipedia.org/wiki/Polynomial_interpolation Examples -------- diff --git a/numpy/lib/utils.py b/numpy/lib/utils.py index 1ecd334afc74..9678bab76c7a 100644 --- a/numpy/lib/utils.py +++ b/numpy/lib/utils.py @@ -982,12 +982,12 @@ def _getmembers(item): #----------------------------------------------------------------------------- # The following SafeEval class and company are adapted from Michael Spencer's -# ASPN Python Cookbook recipe: -# http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/364469 +# ASPN Python Cookbook recipe: https://code.activestate.com/recipes/364469/ +# # Accordingly it is mostly Copyright 2006 by Michael Spencer. # The recipe, like most of the other ASPN Python Cookbook recipes was made # available under the Python license. -# http://www.python.org/license +# https://en.wikipedia.org/wiki/Python_License # It has been modified to: # * handle unary -/+ diff --git a/numpy/linalg/linalg.py b/numpy/linalg/linalg.py index 98af0733bd5c..90dc2e657846 100644 --- a/numpy/linalg/linalg.py +++ b/numpy/linalg/linalg.py @@ -780,7 +780,7 @@ def qr(a, mode='reduced'): dorgqr, and zungqr. For more information on the qr factorization, see for example: - http://en.wikipedia.org/wiki/QR_factorization + https://en.wikipedia.org/wiki/QR_factorization Subclasses of `ndarray` are preserved except for the 'raw' mode. So if `a` is of type `matrix`, all the return values will be matrices too. @@ -1750,7 +1750,7 @@ def matrix_rank(M, tol=None, hermitian=False): References ---------- .. [1] MATLAB reference documention, "Rank" - http://www.mathworks.com/help/techdoc/ref/rank.html + https://www.mathworks.com/help/techdoc/ref/rank.html .. [2] W. H. Press, S. A. Teukolsky, W. T. Vetterling and B. P. Flannery, "Numerical Recipes (3rd edition)", Cambridge University Press, 2007, page 795. @@ -2468,7 +2468,7 @@ def multi_dot(arrays): return functools.reduce(np.dot, arrays) ---------- .. [1] Cormen, "Introduction to Algorithms", Chapter 15.2, p. 370-378 - .. [2] http://en.wikipedia.org/wiki/Matrix_chain_multiplication + .. [2] https://en.wikipedia.org/wiki/Matrix_chain_multiplication Examples -------- diff --git a/numpy/ma/README.txt b/numpy/ma/README.txt index ef9635e57443..47f20d6458e8 100644 --- a/numpy/ma/README.txt +++ b/numpy/ma/README.txt @@ -4,7 +4,7 @@ A Guide to Masked Arrays in NumPy .. Contents:: -See http://www.scipy.org/scipy/numpy/wiki/MaskedArray +See http://www.scipy.org/scipy/numpy/wiki/MaskedArray (dead link) for updates of this document. @@ -18,7 +18,7 @@ that could store some additional information along with numerical values, while keeping the possibility for missing data (picture storing a series of dates along with measurements, what would later become the `TimeSeries Scikit `__ -. +(dead link). I started to implement such a class, but then quickly realized that any additional information disappeared when processing these subarrays diff --git a/numpy/polynomial/chebyshev.py b/numpy/polynomial/chebyshev.py index 8add0acbc90f..946e0499cf18 100644 --- a/numpy/polynomial/chebyshev.py +++ b/numpy/polynomial/chebyshev.py @@ -83,7 +83,7 @@ ---------- .. [1] A. T. Benjamin, et al., "Combinatorial Trigonometry with Chebyshev Polynomials," *Journal of Statistical Planning and Inference 14*, 2008 - (preprint: http://www.math.hmc.edu/~benjamin/papers/CombTrig.pdf, pg. 4) + (preprint: https://www.math.hmc.edu/~benjamin/papers/CombTrig.pdf, pg. 4) """ from __future__ import division, absolute_import, print_function @@ -1708,7 +1708,7 @@ def chebfit(x, y, deg, rcond=None, full=False, w=None): References ---------- .. [1] Wikipedia, "Curve fitting", - http://en.wikipedia.org/wiki/Curve_fitting + https://en.wikipedia.org/wiki/Curve_fitting Examples -------- diff --git a/numpy/polynomial/hermite.py b/numpy/polynomial/hermite.py index 58e9e180f153..75c7e6832431 100644 --- a/numpy/polynomial/hermite.py +++ b/numpy/polynomial/hermite.py @@ -1476,7 +1476,7 @@ def hermfit(x, y, deg, rcond=None, full=False, w=None): References ---------- .. [1] Wikipedia, "Curve fitting", - http://en.wikipedia.org/wiki/Curve_fitting + https://en.wikipedia.org/wiki/Curve_fitting Examples -------- diff --git a/numpy/polynomial/hermite_e.py b/numpy/polynomial/hermite_e.py index 47b2a9fb4e1d..125364a1154b 100644 --- a/numpy/polynomial/hermite_e.py +++ b/numpy/polynomial/hermite_e.py @@ -1473,7 +1473,7 @@ def hermefit(x, y, deg, rcond=None, full=False, w=None): References ---------- .. [1] Wikipedia, "Curve fitting", - http://en.wikipedia.org/wiki/Curve_fitting + https://en.wikipedia.org/wiki/Curve_fitting Examples -------- diff --git a/numpy/polynomial/laguerre.py b/numpy/polynomial/laguerre.py index 5a9a5111abd3..2b9757ab8482 100644 --- a/numpy/polynomial/laguerre.py +++ b/numpy/polynomial/laguerre.py @@ -1475,7 +1475,7 @@ def lagfit(x, y, deg, rcond=None, full=False, w=None): References ---------- .. [1] Wikipedia, "Curve fitting", - http://en.wikipedia.org/wiki/Curve_fitting + https://en.wikipedia.org/wiki/Curve_fitting Examples -------- diff --git a/numpy/polynomial/legendre.py b/numpy/polynomial/legendre.py index 0d4a49afc955..a83c5735ffe9 100644 --- a/numpy/polynomial/legendre.py +++ b/numpy/polynomial/legendre.py @@ -1509,7 +1509,7 @@ def legfit(x, y, deg, rcond=None, full=False, w=None): References ---------- .. [1] Wikipedia, "Curve fitting", - http://en.wikipedia.org/wiki/Curve_fitting + https://en.wikipedia.org/wiki/Curve_fitting Examples -------- diff --git a/numpy/random/mtrand/mtrand.pyx b/numpy/random/mtrand/mtrand.pyx index 43b1060a0d4c..16c58cfce71b 100644 --- a/numpy/random/mtrand/mtrand.pyx +++ b/numpy/random/mtrand/mtrand.pyx @@ -1606,7 +1606,7 @@ cdef class RandomState: References ---------- .. [1] Wikipedia, "Normal distribution", - http://en.wikipedia.org/wiki/Normal_distribution + https://en.wikipedia.org/wiki/Normal_distribution .. [2] P. R. Peebles Jr., "Central Limit Theorem" in "Probability, Random Variables and Random Signal Principles", 4th ed., 2001, pp. 51, 51, 125. @@ -1758,9 +1758,9 @@ cdef class RandomState: .. [1] Peyton Z. Peebles Jr., "Probability, Random Variables and Random Signal Principles", 4th ed, 2001, p. 57. .. [2] Wikipedia, "Poisson process", - http://en.wikipedia.org/wiki/Poisson_process + https://en.wikipedia.org/wiki/Poisson_process .. [3] Wikipedia, "Exponential distribution", - http://en.wikipedia.org/wiki/Exponential_distribution + https://en.wikipedia.org/wiki/Exponential_distribution """ cdef ndarray oscale @@ -1859,7 +1859,7 @@ cdef class RandomState: Wolfram Web Resource. http://mathworld.wolfram.com/GammaDistribution.html .. [2] Wikipedia, "Gamma distribution", - http://en.wikipedia.org/wiki/Gamma_distribution + https://en.wikipedia.org/wiki/Gamma_distribution Examples -------- @@ -1949,7 +1949,7 @@ cdef class RandomState: Wolfram Web Resource. http://mathworld.wolfram.com/GammaDistribution.html .. [2] Wikipedia, "Gamma distribution", - http://en.wikipedia.org/wiki/Gamma_distribution + https://en.wikipedia.org/wiki/Gamma_distribution Examples -------- @@ -2046,7 +2046,7 @@ cdef class RandomState: .. [1] Glantz, Stanton A. "Primer of Biostatistics.", McGraw-Hill, Fifth Edition, 2002. .. [2] Wikipedia, "F-distribution", - http://en.wikipedia.org/wiki/F-distribution + https://en.wikipedia.org/wiki/F-distribution Examples -------- @@ -2149,7 +2149,7 @@ cdef class RandomState: From MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/NoncentralF-Distribution.html .. [2] Wikipedia, "Noncentral F-distribution", - http://en.wikipedia.org/wiki/Noncentral_F-distribution + https://en.wikipedia.org/wiki/Noncentral_F-distribution Examples -------- @@ -2256,7 +2256,7 @@ cdef class RandomState: References ---------- .. [1] NIST "Engineering Statistics Handbook" - http://www.itl.nist.gov/div898/handbook/eda/section3/eda3666.htm + https://www.itl.nist.gov/div898/handbook/eda/section3/eda3666.htm Examples -------- @@ -2332,8 +2332,8 @@ cdef class RandomState: .. [1] Delhi, M.S. Holla, "On a noncentral chi-square distribution in the analysis of weapon systems effectiveness", Metrika, Volume 15, Number 1 / December, 1970. - .. [2] Wikipedia, "Noncentral chi-square distribution" - http://en.wikipedia.org/wiki/Noncentral_chi-square_distribution + .. [2] Wikipedia, "Noncentral chi-squared distribution" + https://en.wikipedia.org/wiki/Noncentral_chi-squared_distribution Examples -------- @@ -2432,12 +2432,12 @@ cdef class RandomState: ---------- .. [1] NIST/SEMATECH e-Handbook of Statistical Methods, "Cauchy Distribution", - http://www.itl.nist.gov/div898/handbook/eda/section3/eda3663.htm + https://www.itl.nist.gov/div898/handbook/eda/section3/eda3663.htm .. [2] Weisstein, Eric W. "Cauchy Distribution." From MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/CauchyDistribution.html .. [3] Wikipedia, "Cauchy distribution" - http://en.wikipedia.org/wiki/Cauchy_distribution + https://en.wikipedia.org/wiki/Cauchy_distribution Examples -------- @@ -2500,7 +2500,7 @@ cdef class RandomState: .. [1] Dalgaard, Peter, "Introductory Statistics With R", Springer, 2002. .. [2] Wikipedia, "Student's t-distribution" - http://en.wikipedia.org/wiki/Student's_t-distribution + https://en.wikipedia.org/wiki/Student's_t-distribution Examples -------- @@ -2730,7 +2730,7 @@ cdef class RandomState: .. [3] Reiss, R.D., Thomas, M.(2001), Statistical Analysis of Extreme Values, Birkhauser Verlag, Basel, pp 23-30. .. [4] Wikipedia, "Pareto distribution", - http://en.wikipedia.org/wiki/Pareto_distribution + https://en.wikipedia.org/wiki/Pareto_distribution Examples -------- @@ -2835,7 +2835,7 @@ cdef class RandomState: Wide Applicability", Journal Of Applied Mechanics ASME Paper 1951. .. [3] Wikipedia, "Weibull distribution", - http://en.wikipedia.org/wiki/Weibull_distribution + https://en.wikipedia.org/wiki/Weibull_distribution Examples -------- @@ -2926,7 +2926,7 @@ cdef class RandomState: Dataplot Reference Manual, Volume 2: Let Subcommands and Library Functions", National Institute of Standards and Technology Handbook Series, June 2003. - http://www.itl.nist.gov/div898/software/dataplot/refman2/auxillar/powpdf.pdf + https://www.itl.nist.gov/div898/software/dataplot/refman2/auxillar/powpdf.pdf Examples -------- @@ -3041,7 +3041,7 @@ cdef class RandomState: From MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/LaplaceDistribution.html .. [4] Wikipedia, "Laplace distribution", - http://en.wikipedia.org/wiki/Laplace_distribution + https://en.wikipedia.org/wiki/Laplace_distribution Examples -------- @@ -3271,7 +3271,7 @@ cdef class RandomState: MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/LogisticDistribution.html .. [3] Wikipedia, "Logistic-distribution", - http://en.wikipedia.org/wiki/Logistic_distribution + https://en.wikipedia.org/wiki/Logistic_distribution Examples -------- @@ -3365,7 +3365,7 @@ cdef class RandomState: .. [1] Limpert, E., Stahel, W. A., and Abbt, M., "Log-normal Distributions across the Sciences: Keys and Clues," BioScience, Vol. 51, No. 5, May, 2001. - http://stat.ethz.ch/~stahel/lognormal/bioscience.pdf + https://stat.ethz.ch/~stahel/lognormal/bioscience.pdf .. [2] Reiss, R.D. and Thomas, M., "Statistical Analysis of Extreme Values," Basel: Birkhauser Verlag, 2001, pp. 31-32. @@ -3471,9 +3471,9 @@ cdef class RandomState: References ---------- .. [1] Brighton Webs Ltd., "Rayleigh Distribution," - http://www.brighton-webs.co.uk/distributions/rayleigh.asp + https://web.archive.org/web/20090514091424/http://brighton-webs.co.uk:80/distributions/rayleigh.asp .. [2] Wikipedia, "Rayleigh distribution" - http://en.wikipedia.org/wiki/Rayleigh_distribution + https://en.wikipedia.org/wiki/Rayleigh_distribution Examples -------- @@ -3559,12 +3559,12 @@ cdef class RandomState: References ---------- .. [1] Brighton Webs Ltd., Wald Distribution, - http://www.brighton-webs.co.uk/distributions/wald.asp + https://web.archive.org/web/20090423014010/http://www.brighton-webs.co.uk:80/distributions/wald.asp .. [2] Chhikara, Raj S., and Folks, J. Leroy, "The Inverse Gaussian Distribution: Theory : Methodology, and Applications", CRC Press, 1988. - .. [3] Wikipedia, "Wald distribution" - http://en.wikipedia.org/wiki/Wald_distribution + .. [3] Wikipedia, "Inverse Gaussian distribution" + https://en.wikipedia.org/wiki/Inverse_Gaussian_distribution Examples -------- @@ -3650,7 +3650,7 @@ cdef class RandomState: References ---------- .. [1] Wikipedia, "Triangular distribution" - http://en.wikipedia.org/wiki/Triangular_distribution + https://en.wikipedia.org/wiki/Triangular_distribution Examples -------- @@ -3757,7 +3757,7 @@ cdef class RandomState: Wolfram Web Resource. http://mathworld.wolfram.com/BinomialDistribution.html .. [5] Wikipedia, "Binomial distribution", - http://en.wikipedia.org/wiki/Binomial_distribution + https://en.wikipedia.org/wiki/Binomial_distribution Examples -------- @@ -3860,7 +3860,7 @@ cdef class RandomState: MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/NegativeBinomialDistribution.html .. [2] Wikipedia, "Negative binomial distribution", - http://en.wikipedia.org/wiki/Negative_binomial_distribution + https://en.wikipedia.org/wiki/Negative_binomial_distribution Examples -------- @@ -3954,7 +3954,7 @@ cdef class RandomState: From MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/PoissonDistribution.html .. [2] Wikipedia, "Poisson distribution", - http://en.wikipedia.org/wiki/Poisson_distribution + https://en.wikipedia.org/wiki/Poisson_distribution Examples -------- @@ -4224,7 +4224,7 @@ cdef class RandomState: MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/HypergeometricDistribution.html .. [3] Wikipedia, "Hypergeometric distribution", - http://en.wikipedia.org/wiki/Hypergeometric_distribution + https://en.wikipedia.org/wiki/Hypergeometric_distribution Examples -------- @@ -4334,7 +4334,7 @@ cdef class RandomState: .. [3] D. J. Hand, F. Daly, D. Lunn, E. Ostrowski, A Handbook of Small Data Sets, CRC Press, 1994. .. [4] Wikipedia, "Logarithmic distribution", - http://en.wikipedia.org/wiki/Logarithmic_distribution + https://en.wikipedia.org/wiki/Logarithmic_distribution Examples -------- @@ -4696,9 +4696,9 @@ cdef class RandomState: ---------- .. [1] David McKay, "Information Theory, Inference and Learning Algorithms," chapter 23, - http://www.inference.phy.cam.ac.uk/mackay/ + http://www.inference.org.uk/mackay/itila/ .. [2] Wikipedia, "Dirichlet distribution", - http://en.wikipedia.org/wiki/Dirichlet_distribution + https://en.wikipedia.org/wiki/Dirichlet_distribution Examples -------- diff --git a/numpy/random/tests/test_random.py b/numpy/random/tests/test_random.py index 61c6e912dae6..7b4f90839574 100644 --- a/numpy/random/tests/test_random.py +++ b/numpy/random/tests/test_random.py @@ -759,7 +759,7 @@ def test_pareto(self): [1.40840323350391515e+02, 1.98390255135251704e+05]]) # For some reason on 32-bit x86 Ubuntu 12.10 the [1, 0] entry in this # matrix differs by 24 nulps. Discussion: - # http://mail.python.org/pipermail/numpy-discussion/2012-September/063801.html + # https://mail.python.org/pipermail/numpy-discussion/2012-September/063801.html # Consensus is that this is probably some gcc quirk that affects # rounding but not in any important way, so we just use a looser # tolerance on this test: diff --git a/numpy/testing/_private/noseclasses.py b/numpy/testing/_private/noseclasses.py index 08dec0ca98e9..e99bbc97de2d 100644 --- a/numpy/testing/_private/noseclasses.py +++ b/numpy/testing/_private/noseclasses.py @@ -26,7 +26,7 @@ #----------------------------------------------------------------------------- # Modified version of the one in the stdlib, that fixes a python bug (doctests -# not found in extension modules, http://bugs.python.org/issue3158) +# not found in extension modules, https://bugs.python.org/issue3158) class NumpyDocTestFinder(doctest.DocTestFinder): def _from_module(self, module, object): diff --git a/numpy/testing/_private/utils.py b/numpy/testing/_private/utils.py index 032c4a116e93..f821fbebd556 100644 --- a/numpy/testing/_private/utils.py +++ b/numpy/testing/_private/utils.py @@ -69,7 +69,7 @@ def import_nose(): if not nose_is_good: msg = ('Need nose >= %d.%d.%d for tests - see ' - 'http://nose.readthedocs.io' % + 'https://nose.readthedocs.io' % minimum_nose_version) raise ImportError(msg) @@ -177,7 +177,7 @@ def GetPerformanceAttributes(object, counter, instance=None, # thread's CPU usage is either 0 or 100). To read counters like this, # you should copy this function, but keep the counter open, and call # CollectQueryData() each time you need to know. - # See http://msdn.microsoft.com/library/en-us/dnperfmo/html/perfmonpt2.asp + # See http://msdn.microsoft.com/library/en-us/dnperfmo/html/perfmonpt2.asp (dead link) # My older explanation for this was that the "AddCounter" process forced # the CPU to 100%, but the above makes more sense :) import win32pdh @@ -1609,7 +1609,7 @@ def _integer_repr(x, vdt, comp): # Reinterpret binary representation of the float as sign-magnitude: # take into account two-complement representation # See also - # http://www.cygnus-software.com/papers/comparingfloats/comparingfloats.htm + # https://randomascii.wordpress.com/2012/02/25/comparing-floating-point-numbers-2012-edition/ rx = x.view(vdt) if not (rx.size == 1): rx[rx < 0] = comp - rx[rx < 0] @@ -1917,7 +1917,7 @@ class suppress_warnings(object): ``warnings.catch_warnings``. However, it also provides a filter mechanism to work around - http://bugs.python.org/issue4180. + https://bugs.python.org/issue4180. This bug causes Python before 3.4 to not reliably show warnings again after they have been ignored once (even within catch_warnings). It diff --git a/numpy/testing/setup.py b/numpy/testing/setup.py index e27a9b85bd4b..7c3f2fbdfd66 100755 --- a/numpy/testing/setup.py +++ b/numpy/testing/setup.py @@ -15,7 +15,7 @@ def configuration(parent_package='',top_path=None): setup(maintainer="NumPy Developers", maintainer_email="numpy-dev@numpy.org", description="NumPy test module", - url="http://www.numpy.org", + url="https://www.numpy.org", license="NumPy License (BSD Style)", configuration=configuration, ) diff --git a/setup.py b/setup.py index 5f314a975917..f0d44fd3e678 100755 --- a/setup.py +++ b/setup.py @@ -16,7 +16,7 @@ Windows wheels are linked against the ATLAS BLAS / LAPACK library, restricted to SSE2 instructions, so may not give optimal linear algebra performance for -your machine. See http://docs.scipy.org/doc/numpy/user/install.html for +your machine. See https://docs.scipy.org/doc/numpy/user/install.html for alternatives. """ @@ -357,7 +357,7 @@ def setup_package(): maintainer_email = "numpy-discussion@python.org", description = DOCLINES[0], long_description = "\n".join(DOCLINES[2:]), - url = "http://www.numpy.org", + url = "https://www.numpy.org", author = "Travis E. Oliphant et al.", download_url = "https://pypi.python.org/pypi/numpy", license = 'BSD', diff --git a/site.cfg.example b/site.cfg.example index 21609a3325ea..48b17fbdffc4 100644 --- a/site.cfg.example +++ b/site.cfg.example @@ -10,7 +10,7 @@ # The format of the file is that of the standard library's ConfigParser module. # No interpolation is allowed, RawConfigParser class being used to load it. # -# http://docs.python.org/3/library/configparser.html +# https://docs.python.org/library/configparser.html # # Each section defines settings that apply to one particular dependency. Some of # the settings are general and apply to nearly any section and are defined here. @@ -122,7 +122,7 @@ # multiprocessing. # (This problem does not exist with multithreaded ATLAS.) # -# http://docs.python.org/3.4/library/multiprocessing.html#contexts-and-start-methods +# https://docs.python.org/library/multiprocessing.html#contexts-and-start-methods # https://github.com/xianyi/OpenBLAS/issues/294 # # [openblas] @@ -197,9 +197,9 @@ # # UMFPACK is not used by numpy. # -# http://www.cise.ufl.edu/research/sparse/umfpack/ -# http://www.cise.ufl.edu/research/sparse/amd/ -# http://scikits.appspot.com/umfpack +# https://www.cise.ufl.edu/research/sparse/umfpack/ +# https://www.cise.ufl.edu/research/sparse/amd/ +# https://scikit-umfpack.github.io/scikit-umfpack/ # #[amd] #amd_libs = amd @@ -213,7 +213,7 @@ # Note that these libraries are not used by for numpy or scipy. # # http://fftw.org/ -# http://cr.yp.to/djbfft.html +# https://cr.yp.to/djbfft.html # # Given only this section, numpy.distutils will try to figure out which version # of FFTW you are using. diff --git a/tools/allocation_tracking/sorttable.js b/tools/allocation_tracking/sorttable.js index 25bccb2b6b91..c9528873e011 100644 --- a/tools/allocation_tracking/sorttable.js +++ b/tools/allocation_tracking/sorttable.js @@ -2,7 +2,7 @@ SortTable version 2 7th April 2007 - Stuart Langridge, http://www.kryogenix.org/code/browser/sorttable/ + Stuart Langridge, https://www.kryogenix.org/code/browser/sorttable/ Instructions: Download this file @@ -11,7 +11,7 @@ Click on the headers to sort Thanks to many, many people for contributions and suggestions. - Licenced as X11: http://www.kryogenix.org/code/browser/licence.html + Licenced as X11: https://www.kryogenix.org/code/browser/licence.html This basically means: do what you want with it. */ @@ -301,7 +301,7 @@ sorttable = { shaker_sort: function(list, comp_func) { // A stable sort function to allow multi-level sorting of data - // see: http://en.wikipedia.org/wiki/Cocktail_sort + // see: https://en.wikipedia.org/wiki/Cocktail_shaker_sort // thanks to Joseph Nahmias var b = 0; var t = list.length - 1; @@ -441,7 +441,7 @@ fixEvent.stopPropagation = function() { /* forEach, version 1.0 Copyright 2006, Dean Edwards - License: http://www.opensource.org/licenses/mit-license.php + License: https://www.opensource.org/licenses/mit-license.php */ // array-like enumeration diff --git a/tox.ini b/tox.ini index e6f1b124f6ce..c7df36e232c2 100644 --- a/tox.ini +++ b/tox.ini @@ -1,7 +1,7 @@ # 'Tox' is a tool for automating sdist/build/test cycles against # multiple Python versions: -# http://pypi.python.org/pypi/tox -# http://tox.testrun.org/ +# https://pypi.python.org/pypi/tox +# https://tox.readthedocs.io/ # Running the command 'tox' while in the root of the numpy source # directory will: