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Commits on Nov 30, 2021

• fix bugs while counting bulk

  ygidtu

  committed
  2055240

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• update readme

  ygidtu

  committed
  fd535bc

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Commits on Nov 29, 2021

• format code, remove redudant imports

  ygidtu

  committed
  3d62deb

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Commits on Nov 19, 2021

• correct the output file format

  ygidtu

  committed
  e69ccc2

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• check barcode for 10x

  ygidtu

  committed
  db97a48

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Commits on Nov 16, 2021

• add barcode filteration while loading reads

  ygidtu

  committed
  5855564

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Commits on Nov 10, 2021

• remove --strict

  ygidtu

  committed
  8b65bc2

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Commits on Nov 9, 2021

• fix utr generation error, add bam check

  ygidtu

  committed
  364e154

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Commits on Nov 5, 2021

• fix inference shift

  ygidtu

  committed
  6a42688

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Commits on Nov 3, 2021

• add --strict in ats, add simulation, fix bugs

  ygidtu

  committed
  b0da067

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Commits on Nov 1, 2021

• 2021.11.1 change ats logic

  ygidtu

  committed
  81a6ad4

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Commits on Oct 14, 2021

• dynamic calculation of UTR length

  ygidtu

  committed
  c75e6c1

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Commits on Oct 13, 2021

• add contig validation

  ygidtu

  committed
  685119e

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Commits on Sep 27, 2021

• add supoort for counting tss from gtf file

  ygidtu

  committed
  50b8222

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• remove duplicate UMI, add support for nanopore

  ygidtu

  committed
  0fa7b92

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Commits on Aug 6, 2021

• 2020.08.06 fix bugs

  ygidtu

  committed
  7ec279f

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Commits on Jul 21, 2021

• fix SE usage

  ygidtu

  committed
  27da9f3

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Commits on Jul 2, 2021

• add barcode list to select filter reads

  ygidtu

  committed
  652ec02

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Commits on Jun 26, 2021

• fix early file close before io finished

  ygidtu

  committed
  08f3704

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Commits on Jun 22, 2021

• add gzip support while formatting

  ygidtu

  committed
  20f89a9

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• fix duplicate rec in preproc, add gzip support

  ygidtu

  committed
  41919e9

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Commits on Jun 18, 2021

• format and filter counts

  ygidtu

  committed
  b9ed749

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• faster and less memory while PSI

  ygidtu

  committed
  73cefa6

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• remove old analysis scripts

  ygidtu

  committed
  d2bc6b3

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Commits on Jun 17, 2021

• update co-expression

  ygidtu

  committed
  fdc0eaf

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Commits on Jun 11, 2021

• fix normpdf and count

  ygidtu

  committed
  5c0d809

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Commits on Jun 10, 2021

• decrapcate jl

  ygidtu

  committed
  6e5dd37

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• remove dict from load_reads

  ygidtu

  committed
  51d5b00

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Commits on Jun 9, 2021

• fix bugs on pysam API usage

  ygidtu

  committed
  84f9cb5

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Commits on Jun 3, 2021

• remove temp files and update core

  ygidtu

  committed
  e0d6577

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Commits on Jun 2, 2021

• test sample

  ygidtu

  committed
  38fb4a1

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• update test case

  ygidtu

  committed
  ec795bb

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• generate reads coord

  ygidtu

  committed
  20f76aa

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• generate test sample

  ygidtu

  committed
  6e4904b

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Commits on May 25, 2021

• inplement isoform in julia

  ygidtu

  committed
  bd2ec5a

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