testing_in_conda.yml

name: TestingInConda

on:
  push:
    branches:
      - '*'
  pull_request:
    branches:
      - '*'
jobs:
  setup-build:
    name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }})
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: ["ubuntu-latest"]
        python-version: ["3.8", "3.9", "3.10", "3.11"]

    steps:
    - uses: actions/checkout@v3
    - name: Setup Conda
      uses: s-weigand/setup-conda@v1
      with:
        update-conda: false
        conda-channels: conda-forge
        python-version: ${{ matrix.python-version }}

    - name: Install Env
      shell: bash
      run: |
        python --version
        conda env create -f environment.yml
        source activate mtpy-v2-test
        pip install git+https://github.com/simpeg/pydiso.git
        conda install pytest
        conda install pytest-subtests
        conda install pytest-cov
        pip install git+https://github.com/kujaku11/mt_metadata.git@main
        pip install git+https://github.com/kujaku11/mth5.git@master
        pip install git+https://github.com/simpeg/aurora@main
        git clone https://github.com/MTgeophysics/mtpy_data.git
        cd mtpy_data
        pip install -e .
        cd ..
        
    - name: Install Our Package
      shell: bash
      run: |
        source activate mtpy-v2-test
        pip install -e .
        conda list
    - name: Run Tests
      shell: bash
      run: |
        source activate mtpy-v2-test
        pytest --cov=./ --cov-report=xml --cov=mtpy
        
    - name: "Upload coverage to Codecov"
      uses: codecov/codecov-action@v3
      env:
        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
      with:
        fail_ci_if_error: false
        verbose: true
        flags: tests