Commits

Branch selector

 main

User selector

All users

Datepicker

All time

Commit History

Commits on Sep 10, 2021

• Accept any ordering given by ListDir in the assert.

  Show description for 1d43aaf
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  1d43aaf

  Copy full SHA for 1d43aaf

• Skip obsolete PDB templates that don't have a replacement.

  Show description for 50ecd75
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  50ecd75

  Copy full SHA for 50ecd75

Commits on Aug 31, 2021

• Ensure values passed to jax.numpy functions are arrays rather than lists.

  Show description for 98caef2
  

  Jake VanderPlas

  authored and

  copybara-github

  committed
  98caef2

  Copy full SHA for 98caef2

• Update the bibtex citation with the issue number and pages

  Show description for 495d81a
  

  mfigurnov

  authored and

  copybara-github

  committed
  495d81a

  Copy full SHA for 495d81a

Commits on Aug 25, 2021

• Fix TensorFlow versions in AlphaFold Colab notebook.

  Show description for b1d772d
  

  DeepMind

  authored and

  copybara-github

  committed
  b1d772d

  Copy full SHA for b1d772d

Commits on Aug 13, 2021

• Use tensorflow-cpu in setup.py as well.

  Show description for 99459ef
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  99459ef

  Copy full SHA for 99459ef

• Use pLDDT in the B-factor column of the output PDBs.

  Show description for cef198e
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  cef198e

  Copy full SHA for cef198e

• Set versions of libraries AlphaFold Colab notebook depends on.

  Show description for f65e94f
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  f65e94f

  Copy full SHA for f65e94f

Commits on Aug 12, 2021

• Remove a redundant space.

  Show description for 05db248
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  05db248

  Copy full SHA for 05db248

Commits on Aug 2, 2021

• Add a direct link to PDB70 2020-05-13.

  Show description for 547cbdd
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  547cbdd

  Copy full SHA for 547cbdd

• Fix a few typos.

  Show description for 41232dc
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  41232dc

  Copy full SHA for 41232dc

Commits on Jul 30, 2021

• Add a comment on the TriangleMultiplication notation.

  Show description for b88f8da
  

  DeepMind

  authored and

  copybara-github

  committed
  b88f8da

  Copy full SHA for b88f8da

• Use Ubuntu 18.04 LTS image.

  Show description for c9ffb0b
  

  Tim Green

  authored and

  copybara-github

  committed
  c9ffb0b

  Copy full SHA for c9ffb0b

Commits on Jul 29, 2021

• Log the total MSA size and number of templates.

  Show description for 00c4c91
  

  Alex Bridgland

  authored and

  copybara-github

  committed
  00c4c91

  Copy full SHA for 00c4c91

• Switch to Tensorflow CPU-only. GPU not needed for data pipeline.

  Show description for b3ed860
  

  Tim Green

  authored and

  copybara-github

  committed
  b3ed860

  Copy full SHA for b3ed860

• Change tex -> bibtex for nicer syntax highlighting.

  Show description for bc5547b
  

  Augustin-Zidek

  authored and

  copybara-github

  committed
  bc5547b

  Copy full SHA for bc5547b

Commits on Jul 27, 2021

• Fix import ordering.

  Show description for 1e216f9
  

  tomwardio

  authored and

  copybara-github

  committed
  1e216f9

  Copy full SHA for 1e216f9

• Collapse hh-suite install steps into single layer.

  Show description for c9e6fed
  

  tomwardio

  authored and

  copybara-github

  committed
  c9e6fed

  Copy full SHA for c9e6fed

• Switch to using cudnn base image.

  Show description for acf25fc
  

  DeepMind

  authored and

  copybara-github

  committed
  acf25fc

  Copy full SHA for acf25fc

Commits on Jul 26, 2021

• Write out pdb70_hits.hhr alongside other MSA outputs.

  Show description for 2028cd0
  

  DeepMind

  authored and

  copybara-github

  committed
  2028cd0

  Copy full SHA for 2028cd0

• Correct mgnify clusters filename.

  Show description for 20a7057
  

  DeepMind

  authored and

  copybara-github

  committed
  20a7057

  Copy full SHA for 20a7057

Commits on Jul 23, 2021

• Fix a link in the README

  Show description for d3a4eef
  

  DeepMind

  authored and

  copybara-github

  committed
  d3a4eef

  Copy full SHA for d3a4eef

Commits on Jul 22, 2021

• Add a Colab notebook, add reduced BFD, and various other fixes and improvements.

  Show description for 0bab1bf
  saran-t

  committed
  0bab1bf

  Copy full SHA for 0bab1bf

Commits on Jul 16, 2021

• Switch BFD download script to mirror.

  

  Tim Green

  committed
  d26287e

  Copy full SHA for d26287e

Commits on Jul 15, 2021

• Initial release of AlphaFold.

  Show description for 1109480
  Augustin-Zidek

  committed
  1109480

  Copy full SHA for 1109480