apollo.config

params {
    config_profile_name        = "apollo"
    config_profile_description = "COH Apollo cluster profile provided by nf-core/configs."
    config_profile_contact     = "Denis O'Meally (@drejom) or HPRCC Helpdesk (HPRCC_Help@coh.org)"
    config_profile_url         = 'https://www.cityofhope.org/ Intranet http://hprcc.coh.org/'
    max_memory                 = 1500.GB
    max_cpus                   = 72
    max_time                   = 500.h
    igenomes_base              = '/ref_genome/igenomes'
}

process {
    resourceLimits = [
        memory: 1500.GB,
        cpus: 72,
        time: 500.h
    ]
    executor     = 'slurm'
    queue        = 'all'
    beforeScript = 'module load singularity'
}

singularity {
    enabled    = true
    libraryDir = '/opt/singularity-images/nextflow'
}

executor {
    name      = 'slurm'
    queueSize = 1000
}

cleanup = true

profiles {
    debug {
        cleanup = false
    }
}