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make gzip step in create-symlink.cwl optional #132

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mpoelchau opened this issue Apr 4, 2022 · 1 comment
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make gzip step in create-symlink.cwl optional #132

mpoelchau opened this issue Apr 4, 2022 · 1 comment
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@mpoelchau
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mpoelchau commented Apr 4, 2022 •
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In CreateSymlink-workflow.cwl, there is a step that gzips the scaffold file. This can be a bit annoying if you have to re-run the workflow - you need to unzip the file again in order for the workflow to succeed.

It would be nice if the step scaffold_gzip were conditional. We'd have to think creatively about how to implement this. It would be best if the scaffold_gzip step were only skipped if there was already a gzipped scaffold file present.
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Added in #138

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