NAMESPACE

# Generated by roxygen2: do not edit by hand

export(add_network)
export(aggregate_matrix)
export(bipartite_peaks2genes)
export(bipartite_tfs2peaks)
export(compute_atac_peak_network)
export(compute_gene_network)
export(compute_tf_network)
export(define_binding_regions)
export(define_enhancers)
export(define_general_config)
export(define_grn)
export(define_output)
export(define_target_genes)
export(find_peaks_near_genes)
export(format_bipartites_names)
export(format_multiplex_names)
export(get_genome_annotations)
export(get_tf2motifs)
export(get_tfs)
export(hummus_object)
export(peaks_in_regulatory_elements)
export(run_cicero_wrapper)
export(save_multilayer)
export(store_network)
exportClasses(bipartite)
exportClasses(hummus_object)
exportClasses(motifs_db)
exportClasses(multilayer)
exportClasses(multiplex)
import(sparseMatrixStats)
importClassesFrom(SeuratObject,Seurat)
importClassesFrom(Signac,Motif)
importClassesFrom(TFBSTools,PWMatrixList)
importFrom(methods,setClass)