issues Search Results · repo:OpenGene/AfterQC language:Python
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inOpenGene/AfterQC (press backspace or delete to remove)Hi my bioconda install is reporting this needs Py 3.0. I can set up a Py 2.7 environment for just this of course, but
wondered if there would be a Py3.6+ version or if I am being silly in some way? Kind ...
RichardBJ
- Opened on Nov 1, 2022
- #45
Hi, what is the principle of AfterQC to detect bubbles? how is it reflected in the data?
yinbinqiu
- Opened on Sep 29, 2022
- #44
Hi!
I managed to run AfterQC succesfully the first time I used it with one of my libraries with the following command line:
pypy /home/pop_manuel/proyecto_transcriptoma_rhizophagus/software/AfterQC-master/after.py ...
mquijano1
- 1
- Opened on Jan 12, 2022
- #43
It may be a good idea to implement and option to remove specific sequences like overrepresented sequences, usually being
rRNA or PCR artefacts; well passing these sequences in a fasta or identifying them ...
manuelsmendoza
- Opened on Aug 20, 2020
- #42
Hi there I am getting the following error Traceback (most recent call last): File
/Users/apple/miniconda3/envs/py27/bin/after.py , line 228, in module main() File
/Users/apple/miniconda3/envs/py27/bin/after.py ...
sankadinesh
- Opened on May 31, 2020
- #41
I would like to ask a question. Can I parse paired-end files after the process joined by AfterQC?
fabianomenegidio
- Opened on Jan 29, 2019
- #39
Hi, Shifu
I and my colleague (@yodeng) encountered this issue recently.
This issue may be caused by the reassignment of empty list to self.records at a href=
https://github.com/OpenGene/AfterQC/blob/master/circledetector.py#L19 ...
slw287r
- Opened on Nov 28, 2018
- #38
AfterQC is constantly counting wrong the total bases in paired end Miseq fastq reads. For example two paired end files
with total bases 611,060,153 (as calculated by various programs) it seems to have ...
pbravakos
- 1
- Opened on Jul 4, 2018
- #37
Hi , in preprocesser.py line 498 , your code is : if lowQual1 self.options.unqualified_base_limit or lowQual1
self.options.unqualified_base_limit: I suppose the code should be : if lowQual1 self.options.unqualified_base_limit ...
emojinchuan
- Opened on Jun 19, 2018
- #36
Hello, I have using afterqc with default settings to remove adapter sequences from RNA Seq read files. My original files
have all the reads of uniform length. After processing with afterqc the sequence ...
coolmak32
- 7
- Opened on Mar 9, 2018
- #35
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