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Commits on May 3, 2016

• r1134: use AH:* instead of AH:Y

  lh3

  committed
  7ec3261

Commits on Apr 28, 2016

• r1130: changed "ah" to "AH"

  lh3

  committed
  3c03825

Commits on Feb 23, 2016

• Released bwa-0.7.13 (r1126)

  lh3

  committed
  9e5852c

• use /usr/env/perl

  lh3

  committed
  b94a78a

• added comment

  lh3

  committed
  f1ce529

• Port lh3#48 to the dev branch

  lh3

  committed
  11437a1

Commits on Feb 13, 2016

• moved indexing to libbwa

  lh3

  committed
  9a82834

Commits on Feb 1, 2016

• r1102: resumed versioning

  lh3

  committed
  86170ff

• updated GRCh38 download link

  lh3

  committed
  ede7b09

• a typo in fastmap command-line prompt

  lh3

  committed
  1e6a10c

• use /usr/bin/env perl

  lh3

  committed
  6f0ea0b

Commits on Jan 27, 2016

• integer overflow on indexing

  lh3

  committed
  fdf4700

• make kthread.c compiled with g++

  lh3

  committed
  c819643

• removed the pbread mode

  Show description for 1247dc2
  lh3

  committed
  1247dc2

Commits on Jan 26, 2016

• Merge branch 'dev' of github.com:lh3/bwa into dev

  lh3

  committed
  616a534

• updated dependencies

  lh3

  committed
  feeb41f

• ropebwt2 for bwt construction

  lh3

  committed
  be2020c

Commits on Nov 15, 2015

• Merge pull request lh3#47 from mfcovington/feature/fix-maxk-error

  Show description for e3ea2a8
  lh3

  committed
  e3ea2a8

• Include 'unistd.h' to explicitly declare 'getopt'

  mfcovington

  committed
  c2efebe

Commits on Aug 27, 2015

• fixed a bug in reverse-complement

  lh3

  committed
  6c668d3

Commits on Mar 25, 2015

• r1044: fixed an out-of-order bug in kthread

  lh3

  committed
  3ae437a

Commits on Feb 8, 2015

• added maxk: max unique k-mer at each position

  lh3

  committed
  163f949

Commits on Dec 29, 2014

• changed download link: 0.7.11 => 0.7.12

  lh3

  committed
  1f99921

Commits on Dec 28, 2014

• Released 0.7.12

  lh3

  committed
  8211fbc

Commits on Dec 24, 2014

• r1038: wrong 0x100|0x800 flags in PE mode

  lh3

  committed
  e746a3e

• r1037: wrong read number flag

  lh3

  committed
  3ae8d4b

• r1036: PE ALT mapping incorrect

  Show description for b9bbf2d
  lh3

  committed
  b9bbf2d

Commits on Dec 23, 2014

• Released bwa-0.7.11-r1034

  lh3

  committed
  408fd5e

• hs38D1=>hs38DH; cmd help for run-gen-ref

  lh3

  committed
  d7ce7e1

Commits on Dec 21, 2014

• updated documentations

  Show description for ed95769
  lh3

  committed
  ed95769

• improved doc and don't type HLA by default

  lh3

  committed
  c05a721

• write empty .gt file as a placeholder

  Show description for 5aba188
  lh3

  committed
  5aba188

• updated decoy sequences and names

  lh3

  committed
  32c4e3f

Commits on Dec 12, 2014

• r1027: segfault caused by the last commit

  lh3

  committed
  c561759

Commits on Dec 11, 2014

• r1025: accept file with -H; allow to replace @sq

  lh3

  committed
  925ddfb

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