Makevars.in

# Copyright 2019 Fred Hutchinson Cancer Research Center
# See the included LICENSE file for details on the licence that is granted to the user of this software.
#  GNUMakefile
 
# Just a snippet to stop executing under other make(1) commands
# that won't understand these lines
ifneq (,)
This makefile requires GNU Make.
endif

	
CXX_STD = CXX11
boost_sys_src=${wildcard boost/libs/system/src/*.cpp}
boost_sys_objs=${boost_sys_src:.cpp=.o}
boost_fs_src=${wildcard boost/libs/filesystem/src/*.cpp}
boost_fs_objs=${boost_fs_src:.cpp=.o}


PKG_CPPFLAGS =-DROUT -I../inst/include -w -Wfatal-errors -DBOOST_NO_AUTO_PTR -DBOOST_FILESYSTEM_NO_CXX20_ATOMIC_REF -DBOOST_FILESYSTEM_SINGLE_THREADED #the last to flagsare needed to compile bundled boost file system library 1.78

cytolib_src=${wildcard *.cpp}
cytolib_objs=${cytolib_src:.cpp=.o}

BOOSTFSLIB = libboost_fs.a
USERDIR = ${R_PACKAGE_DIR}/lib${R_ARCH}
USERLIB = ${USERDIR}/libcytolib.a

OBJECTS=dummy.o

#needs to wrap in $(shell) to strip the quotes returned by rhdf5lib::pkgconfig
FSLIB = ${boost_fs_objs} ${boost_sys_objs}



all: $(SHLIB) 

$(SHLIB): $(USERLIB)

$(USERLIB): ${boost_fs_objs} ${cytolib_objs} 
	mkdir -p "${USERDIR}"
	$(AR) rs "${USERLIB}" ${cytolib_objs} ${boost_fs_objs} ${boost_sys_objs}

$(boost_fs_objs): ${boost_sys_objs}


clean:
	rm -f $(OBJECTS) ${cytolib_objs} ${boost_fs_objs} ${boost_sys_objs} $(SHLIB)