From 4fd56979b011e71e5020e4a8de2088a4f3a459fe Mon Sep 17 00:00:00 2001 From: JasmineZhen218 <54865871+JasmineZhen218@users.noreply.github.com> Date: Mon, 20 Jul 2020 11:25:04 -0400 Subject: [PATCH] Create README.md --- README.md | 9 +++++++++ 1 file changed, 9 insertions(+) create mode 100644 README.md diff --git a/README.md b/README.md new file mode 100644 index 0000000..b242a61 --- /dev/null +++ b/README.md @@ -0,0 +1,9 @@ +# Readme + +This a repository of multiple instance learning (MIL) applied to digital pathology scenerio. MIL would be used to discover "key tumor regions" or "key responsisive regions to therapy" within the Whole Slide Image(WSI) + +* Crop patches and save to disk `create_dataset.py` + +* Train a MIL model: `train_model.py` + +* Apply pretrained model to WSI and generate heatmap `apply_model.py`