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Commits on Jul 24, 2019

• Propagate --use-wget flag in standard installation (DerrickWood#136)

  Show description for 5734812
  

  ExplodingCabbage

  authored and

  jenniferlu717

  committed
  5734812

Commits on May 4, 2019

• Updated version number to 1.1.1

  Show description for e343539
  

  Jennifer Lu

  committed
  e343539

Commits on Apr 26, 2019

• Adding --use-wget option for downloading libraries

  

  Jennifer Lu

  committed
  41b5e9d

Commits on Apr 22, 2019

• Fixed download_taxonomy.sh - NCBI accession2taxid

  Show description for 69a6827
  jenniferlu717

  authored
  69a6827

Commits on Jan 10, 2018

• Fixes a bug where unclassified paired output files are not created (DerrickWood#103)

  Show description for 352e780
  

  smdabdoub

  authored and

  jenniferlu717

  committed
  352e780

Commits on Oct 30, 2017

• Updated MANUAL.html and CHANGELOG to reflect additional --out-fmt options.

  Show description for 1bb596c
  

  Jennifer Lu

  committed
  1bb596c

• Merge pull request DerrickWood#85 from dfornika/easy-un-pair

  Show description for 5bb5be0
  jenniferlu717

  authored
  5bb5be0

Commits on Oct 27, 2017

• Merge pull request DerrickWood#93 from johnne/master

  Show description for f2910a8
  jenniferlu717

  authored
  f2910a8

• Use gunzip -c instead of zcat on gzipped genomes

  Show description for 283c1a7
  

  John Sundh

  authored
  283c1a7

Commits on Oct 23, 2017

• Updated CHANGELOG to reflect new v1.0 release.

  

  Jennifer Lu

  committed
  2132b5d

Commits on Oct 20, 2017

• More prep for 1.0

  DerrickWood

  committed
  11941c8

• Revise doc times, prep for 1.0

  DerrickWood

  committed
  7a9ace0

Commits on Oct 19, 2017

• Updating MANUAL files with updated RAM requirements and runtimes.

  

  Jennifer Lu

  committed
  22dc088

Commits on Oct 8, 2017

• Silence progress for non-terminal stderr

  DerrickWood

  committed
  8ecfcd5

Commits on Oct 7, 2017

• Silence set_lcas progress for file output

  DerrickWood

  committed
  9861c24

• Add dry run to rsync to handle missing files

  DerrickWood

  committed
  f71f9f0

• Skip completed downloads

  DerrickWood

  committed
  0bd7b7b

• Add new k-mer estimator to build

  DerrickWood

  committed
  ec3eca8

• Add k-mer estimation program

  DerrickWood

  committed
  ab410bb

Commits on Sep 10, 2017

• Remove unused flags

  dfornika

  committed
  999635a

• More descriptive variable name pos -> delimiter_pos

  dfornika

  committed
  aabe7ea

• Remove unnecessary repetitive declaration of string delimiter = "|"

  dfornika

  committed
  b8b1dac

• --fastq-output is not supported with --out-fmt legacy

  dfornika

  committed
  c470c35

• Removed unused arguments

  dfornika

  committed
  cfa43fa

• Added kraken flag --out-fmt

  dfornika

  committed
  79eb24e

Commits on Sep 9, 2017

• Paired/Unpaired output for FASTA/FASTQ

  dfornika

  committed
  57dddcc

• Implemented paired output (with filename prefix)

  dfornika

  committed
  15ad018

Commits on Sep 8, 2017

• Preserve full fastq header (including one whitespace char)

  dfornika

  committed
  0a2c428

• Added fastq output to read merger, using '|' delimiter

  dfornika

  committed
  25505da

• Enable fastq output of classified/unclassified reads in paired mode

  dfornika

  committed
  23ffc82

• Change read separator to '|'

  dfornika

  committed
  6e8c9c2

Commits on Sep 6, 2017

• Merge pull request DerrickWood#82 from dfornika/add-to-library-gb

  Show description for ea138ac
  jenniferlu717

  authored
  ea138ac

Commits on Sep 2, 2017

• Added quote around filename variable to escape metacharacters

  dfornika

  committed
  6c85230

• Simplify decompression, don't check for .gz extension

  dfornika

  committed
  89e6e56

• Support .gbk / .gbff [.gz] files

  dfornika

  committed
  39aaaa0

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