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ShapeWorksStudioApp.cpp
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// std
#include <QWidget>
#include <iostream>
// qt
#include <QCloseEvent>
#include <QFileDialog>
#include <QMessageBox>
#include <QMimeData>
#include <QProcess>
#include <QPushButton>
#include <QTextStream>
#include <QWidgetAction>
// vtk
#include <vtkPointData.h>
#include <vtkPolyDataWriter.h>
#include <vtkRenderWindow.h>
// shapeworks
#include <Applications/Configuration.h>
#include <Logging.h>
#include <Mesh/Mesh.h>
#include <SurfaceReconstructor.h>
#include <Utils/StringUtils.h>
// studio
#include <Analysis/AnalysisTool.h>
#include <Data/DataTool.h>
#include <Data/ExportUtils.h>
#include <Data/Preferences.h>
#include <Data/Session.h>
#include <Data/Telemetry.h>
#include <DeepSSM/DeepSSMTool.h>
#include <ShapeWorksMONAI/MonaiLabelTool.h>
#include <Groom/GroomTool.h>
#include <Interface/CompareWidget.h>
#include <Interface/ExportImageDialog.h>
#include <Interface/KeyboardShortcuts.h>
#include <Interface/ShapeWorksStudioApp.h>
#include <Interface/SplashScreen.h>
#include <Interface/StatusBarWidget.h>
#include <Interface/UpdateChecker.h>
#include <Interface/WheelEventForwarder.h>
#include <Optimize/OptimizeTool.h>
#include <Python/PythonWorker.h>
#include <Shape.h>
#include <Utils/StudioUtils.h>
#include <Visualization/Lightbox.h>
#include <Visualization/Visualizer.h>
// ui
#include <ui_ShapeWorksStudioApp.h>
namespace shapeworks {
static constexpr int ITEM_DISABLE = 0;
static constexpr int ITEM_ENABLE = (1 | 32);
static constexpr int ITEM_ROLE = Qt::UserRole - 1;
const std::string ShapeWorksStudioApp::SETTING_ZOOM_C("zoom_state");
//---------------------------------------------------------------------------
ShapeWorksStudioApp::ShapeWorksStudioApp() {
ui_ = new Ui_ShapeWorksStudioApp;
ui_->setupUi(this);
setAcceptDrops(true);
status_bar_ = new StatusBarWidget(this);
connect(status_bar_, &StatusBarWidget::toggle_log_window, this, &ShapeWorksStudioApp::toggle_log_window);
studio_vtk_output_window_ = vtkSmartPointer<StudioVtkOutputWindow>::New();
vtkOutputWindow::SetInstance(studio_vtk_output_window_);
logger_.register_callbacks();
connect(&logger_, &StudioLogger::message, this, &ShapeWorksStudioApp::handle_message);
connect(&logger_, &StudioLogger::error, this, &ShapeWorksStudioApp::handle_error);
connect(&logger_, &StudioLogger::warning, this, &ShapeWorksStudioApp::handle_warning);
connect(&logger_, &StudioLogger::debug, this, &ShapeWorksStudioApp::handle_debug);
connect(&logger_, &StudioLogger::status, this, &ShapeWorksStudioApp::handle_status);
connect(&logger_, &StudioLogger::progress, this, &ShapeWorksStudioApp::handle_progress_with_message);
// default hide
ui_->feature_widget->hide();
ui_->image_widget->hide();
recent_file_actions_.append(ui_->action_recent1);
recent_file_actions_.append(ui_->action_recent2);
recent_file_actions_.append(ui_->action_recent3);
recent_file_actions_.append(ui_->action_recent4);
recent_file_actions_.append(ui_->action_recent5);
recent_file_actions_.append(ui_->action_recent6);
recent_file_actions_.append(ui_->action_recent7);
recent_file_actions_.append(ui_->action_recent8);
for (int i = 0; i < 8; i++) {
connect(recent_file_actions_[i], SIGNAL(triggered()), this, SLOT(handle_open_recent()));
}
update_recent_files();
py_worker_ = QSharedPointer<PythonWorker>::create();
py_worker_->set_vtk_output_window(studio_vtk_output_window_);
#if defined(Q_OS_LINUX)
ui_->action_show_project_folder->setVisible(false);
#endif
splash_screen_ = QSharedPointer<SplashScreen>(new SplashScreen(this, preferences_));
connect(splash_screen_.data(), &SplashScreen::open_project, this, &ShapeWorksStudioApp::open_project);
wheel_event_forwarder_ = QSharedPointer<WheelEventForwarder>(new WheelEventForwarder(ui_->vertical_scroll_bar));
ui_->qvtkWidget->installEventFilter(wheel_event_forwarder_.data());
ui_->qvtkWidget->setContextMenuPolicy(Qt::CustomContextMenu);
// analysis tool initializations
analysis_tool_ = QSharedPointer<AnalysisTool>::create(preferences_);
analysis_tool_->set_app(this);
ui_->stacked_widget->addWidget(analysis_tool_.data());
connect(analysis_tool_.data(), &AnalysisTool::update_view, this,
&ShapeWorksStudioApp::handle_display_setting_changed);
connect(analysis_tool_.data(), &AnalysisTool::analysis_mode_changed, this, &ShapeWorksStudioApp::reset_num_viewers);
connect(analysis_tool_.data(), &AnalysisTool::pca_update, this, &ShapeWorksStudioApp::handle_pca_update);
connect(analysis_tool_.data(), &AnalysisTool::progress, this, &ShapeWorksStudioApp::handle_progress);
connect(analysis_tool_.data(), &AnalysisTool::reconstruction_complete, this,
&ShapeWorksStudioApp::handle_reconstruction_complete);
// DeepSSM tool init
deepssm_tool_ = QSharedPointer<DeepSSMTool>::create(preferences_);
deepssm_tool_->set_app(this);
ui_->stacked_widget->addWidget(deepssm_tool_.data());
connect(deepssm_tool_.data(), &DeepSSMTool::progress, this, &ShapeWorksStudioApp::handle_progress);
connect(deepssm_tool_.data(), &DeepSSMTool::update_view, this, &ShapeWorksStudioApp::handle_display_setting_changed);
// monai tool init
monai_tool_ = QSharedPointer<monailabel::MonaiLabelTool>::create(preferences_);
monai_tool_->set_app(this);
ui_->stacked_widget->addWidget(monai_tool_.data());
connect(monai_tool_.data(), &monailabel::MonaiLabelTool::progress, this, &ShapeWorksStudioApp::handle_progress);
connect(monai_tool_.data(), &monailabel::MonaiLabelTool::update_view, this, &ShapeWorksStudioApp::handle_display_setting_changed);
connect(monai_tool_.data(), &monailabel::MonaiLabelTool::sampleChanged, this, &ShapeWorksStudioApp::reset_num_viewers);
// resize from preferences
if (!preferences_.get_window_geometry().isEmpty()) {
restoreGeometry(preferences_.get_window_geometry());
}
if (!preferences_.get_window_state().isEmpty()) {
restoreState(preferences_.get_window_state());
}
// set to import
ui_->action_import_mode->setChecked(true);
ui_->stacked_widget->setCurrentIndex(DisplayMode::Original);
action_group_ = new QActionGroup(this);
action_group_->addAction(ui_->action_import_mode);
action_group_->addAction(ui_->action_groom_mode);
action_group_->addAction(ui_->action_optimize_mode);
action_group_->addAction(ui_->action_analysis_mode);
action_group_->addAction(ui_->action_deepssm_mode);
action_group_->addAction(ui_->action_monai_mode);
lightbox_ = LightboxHandle(new Lightbox());
connect(lightbox_.get(), &Lightbox::right_click, this, &ShapeWorksStudioApp::handle_lightbox_right_click);
// visualizer initializations
visualizer_ = QSharedPointer<Visualizer>::create(preferences_);
visualizer_->set_lightbox(lightbox_);
// data tool initialization
data_tool_ = QSharedPointer<DataTool>::create(preferences_);
connect(data_tool_.data(), &DataTool::import_button_clicked, this, &ShapeWorksStudioApp::on_action_import_triggered);
ui_->stacked_widget->addWidget(data_tool_.data());
// groom tool initialization
groom_tool_ = QSharedPointer<GroomTool>::create(preferences_, telemetry_);
ui_->stacked_widget->addWidget(groom_tool_.data());
connect(groom_tool_.data(), &GroomTool::groom_start, this, &ShapeWorksStudioApp::handle_groom_start);
connect(groom_tool_.data(), &GroomTool::groom_complete, this, &ShapeWorksStudioApp::handle_groom_complete);
connect(groom_tool_.data(), &GroomTool::progress, this, &ShapeWorksStudioApp::handle_progress);
// optimize tool initialization
optimize_tool_ = QSharedPointer<OptimizeTool>::create(preferences_, telemetry_);
ui_->stacked_widget->addWidget(optimize_tool_.data());
connect(optimize_tool_.data(), SIGNAL(optimize_complete()), this, SLOT(handle_optimize_complete()));
connect(optimize_tool_.data(), &OptimizeTool::optimize_start, this, &ShapeWorksStudioApp::handle_optimize_start);
connect(optimize_tool_.data(), &OptimizeTool::status, this, &ShapeWorksStudioApp::handle_status);
connect(optimize_tool_.data(), &OptimizeTool::progress, this, &ShapeWorksStudioApp::handle_progress);
// set up preferences window
preferences_window_ = QSharedPointer<PreferencesWindow>(new PreferencesWindow(this, preferences_));
connect(preferences_window_.data(), SIGNAL(clear_cache()), this, SLOT(handle_clear_cache()));
connect(preferences_window_.data(), SIGNAL(update_view()), this, SLOT(handle_color_scheme()));
connect(preferences_window_.data(), SIGNAL(slider_update()), this, SLOT(handle_slider_update()));
connect(ui_->alignment_combo, qOverload<int>(&QComboBox::currentIndexChanged), this,
&ShapeWorksStudioApp::handle_alignment_changed);
create_compare_submenu();
// regression tool TODO
/*analysis_tool_ = QSharedPointer<AnalysisTool> (new AnalysisTool());
analysis_tool_->set_project( session_ );
analysis_tool_->set_app( this );
ui_->lower_stacked_widget->addWidget( analysis_tool_.data() );*/
new_session();
update_from_preferences();
update_display();
update_view_combo();
connect(ui_->features, qOverload<int>(&QComboBox::currentIndexChanged), this,
&ShapeWorksStudioApp::update_feature_map_selection);
connect(ui_->image_combo_, qOverload<int>(&QComboBox::currentIndexChanged), this,
&ShapeWorksStudioApp::image_combo_changed);
connect(ui_->feature_uniform_scale, &QCheckBox::toggled, this, &ShapeWorksStudioApp::set_feature_uniform_scale);
// glyph options signals/slots
connect(ui_->glyphs_visible_button, &QPushButton::clicked, this, &ShapeWorksStudioApp::handle_glyph_changed);
connect(ui_->surface_visible_button, &QPushButton::clicked, this, &ShapeWorksStudioApp::handle_glyph_changed);
enable_possible_actions();
connect(ui_->actionAbout, &QAction::triggered, this, &ShapeWorksStudioApp::about);
connect(ui_->actionKeyboard_Shortcuts, &QAction::triggered, this, &ShapeWorksStudioApp::keyboard_shortcuts);
connect(ui_->action_export_pca_montage, &QAction::triggered, this,
&ShapeWorksStudioApp::action_export_pca_montage_triggered);
connect(ui_->action_export_screenshot, &QAction::triggered, this,
&ShapeWorksStudioApp::action_export_screenshot_triggered);
connect(ui_->action_export_particle_scalars, &QAction::triggered, this,
&ShapeWorksStudioApp::action_export_particle_scalars_triggered);
connect(ui_->action_export_all_subjects_particle_scalars, &QAction::triggered, this,
&ShapeWorksStudioApp::action_export_all_subjects_particle_scalars_triggered);
connect(ui_->action_export_current_mesh, &QAction::triggered, this,
&ShapeWorksStudioApp::action_export_current_mesh_triggered);
connect(ui_->save_as_swproj, &QAction::triggered, this, &ShapeWorksStudioApp::save_as_swproj_clicked);
connect(ui_->save_as_xlsx, &QAction::triggered, this, &ShapeWorksStudioApp::save_as_xlsx_clicked);
update_feature_map_scale();
SW_LOG("ShapeWorks Studio Initialized");
SW_DEBUG("Debug logging enabled");
connect(splash_screen_.get(), &SplashScreen::accepted, this, &ShapeWorksStudioApp::splash_screen_closed);
connect(ui_->action_check_for_updates, &QAction::triggered, this,
[&]() { update_checker_.run_manual_update_check(); });
}
//---------------------------------------------------------------------------
ShapeWorksStudioApp::~ShapeWorksStudioApp() {}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::initialize_vtk() { lightbox_->set_render_window(ui_->qvtkWidget->renderWindow()); }
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::on_action_new_project_triggered() {
bool needs_save = session_ ? session_->is_modified() : false;
if (needs_save && ui_->action_save_project->isEnabled()) {
// save the size of the window to preferences
QMessageBox msgBox;
msgBox.setText("Do you want to save your changes?");
msgBox.setStandardButtons(QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel);
msgBox.setDefaultButton(QMessageBox::Save);
int ret = msgBox.exec();
if (ret == QMessageBox::Save) {
if (!on_action_save_project_triggered()) {
return;
}
} else if (ret == QMessageBox::Cancel) {
return;
}
}
new_session();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::on_actionShow_Tool_Window_triggered() {
ui_->controlsDock->setVisible(true);
ui_->controlsDock->show();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::on_action_open_project_triggered() {
auto filter = tr("ShapeWorks Project (*.swproj *.xlsx)");
QString filename =
QFileDialog::getOpenFileName(this, tr("Open Project..."), preferences_.get_last_directory(), filter);
if (filename.isEmpty()) {
return;
}
preferences_.set_last_directory(QFileInfo(filename).absolutePath());
open_project(filename);
enable_possible_actions();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::on_action_show_project_folder_triggered() {
auto filename = session_->get_filename();
if (filename == "") {
handle_message("No project");
}
QProcess process;
process.setProcessChannelMode(QProcess::MergedChannels);
#ifdef _WIN32
auto qstring_path = QFileInfo(filename).absoluteDir().absolutePath();
qstring_path = qstring_path.replace(QString("/"), QString("\\"));
process.start("explorer.exe", QStringList() << qstring_path);
#else
process.start("open", QStringList() << "-R" << filename);
#endif
if (!process.waitForFinished()) {
QString error = QString("Could not open project: ") + process.errorString() + ".";
SW_ERROR(error.toStdString());
}
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::save_as_swproj_clicked() { save_project_as("swproj"); }
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::save_as_xlsx_clicked() { save_project_as("xlsx"); }
//---------------------------------------------------------------------------
bool ShapeWorksStudioApp::on_action_save_project_triggered() {
if (session_->get_filename() == "") {
return save_project_as("swproj");
} else {
save_project(session_->get_filename());
}
return true;
}
//---------------------------------------------------------------------------
bool ShapeWorksStudioApp::save_project_as(QString ext) {
QString filetype = tr("ShapeWorks Project (*.swproj);;XLSX files (*.xlsx)");
QString default_filter = "ShapeWorks Project (*.swproj)";
if (ext == "xlsx") {
filetype = tr("XLSX files (*.xlsx);;ShapeWorks Project (*.swproj)");
default_filter = "XLSX files (*.xlsx)";
}
QString filename = ExportUtils::get_save_filename(this, tr("Save Project As..."), filetype, default_filter);
if (filename.isEmpty()) {
return false;
}
save_project(filename);
preferences_.add_recent_file(filename, QDir::currentPath());
update_recent_files();
enable_possible_actions();
return false;
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::on_action_quit_triggered() { qApp->closeAllWindows(); }
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::on_action_import_triggered() {
auto filenames =
QFileDialog::getOpenFileNames(this, tr("Import Files..."), preferences_.get_last_directory(),
tr("Supported types (*.nrrd *.nii *.nii.gz *.mha *.vtk *.ply *.vtp *.obj *.stl)"));
if (filenames.size() == 0) {
// was cancelled
return;
}
preferences_.set_last_directory(QFileInfo(filenames[0]).absolutePath());
// need to re-run everything if something new is added.
session_->set_display_mode(DisplayMode::Original);
import_files(filenames);
visualizer_->update_lut();
enable_possible_actions();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::splash_screen_closed() {
QTimer::singleShot(1000, this, [&]() {
telemetry_.record_event("startup", {});
update_checker_.run_auto_update_check();
});
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::import_files(QStringList file_names) {
handle_message("Loading Files...");
handle_progress(-1);
QCoreApplication::processEvents();
std::vector<std::string> list;
for (auto& a : file_names) {
list.push_back(a.toStdString());
}
try {
bool first_load = false;
if (session_->get_num_shapes() == 0 && file_names.size() > 0) {
// if nothing is loaded, take the path of the first one as the relative path
first_load = true;
session_->set_project_path(QFileInfo(file_names[0]).absolutePath());
}
session_->load_original_files(list);
session_->get_project()->update_subjects();
update_table();
enable_possible_actions();
update_display(true);
visualizer_->update_viewer_properties();
reset_num_viewers();
preferences_.set_last_directory(QFileInfo(file_names[0]).absolutePath());
if (first_load) {
// On first load, we can check if there was an active scalar on loaded meshes
session_->set_feature_map(session_->get_default_feature_map());
}
} catch (std::runtime_error& e) {
handle_error(e.what());
}
handle_message("Files loaded");
handle_progress(100);
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::on_zoom_slider_valueChanged() {
if (!lightbox_->render_window_ready()) {
return;
}
int value = ui_->zoom_slider->value();
if (value == 0) {
lightbox_->set_tile_layout(1, 1);
} else if (value == 1) {
lightbox_->set_tile_layout(2, 1);
} else {
lightbox_->set_tile_layout(value, value);
}
update_scrollbar();
on_vertical_scroll_bar_valueChanged();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::disable_all_actions() {
// export / save / new / open
ui_->action_save_project->setEnabled(false);
ui_->menu_save_project_as->setEnabled(false);
ui_->actionExport_PCA_Mesh->setEnabled(false);
ui_->actionExport_Eigenvalues->setEnabled(false);
ui_->actionExport_Eigenvectors->setEnabled(false);
ui_->actionExport_PCA_Mode_Points->setEnabled(false);
ui_->action_new_project->setEnabled(false);
ui_->action_open_project->setEnabled(false);
ui_->action_import->setEnabled(false);
ui_->menuExport->setEnabled(false);
ui_->action_export_pca_montage->setEnabled(false);
ui_->action_export_screenshot->setEnabled(false);
ui_->action_export_particle_scalars->setEnabled(false);
// subtools
data_tool_->disable_actions();
groom_tool_->disable_actions();
optimize_tool_->disable_actions();
// recent
QStringList recent_files = preferences_.get_recent_files();
int num_recent_files = qMin(recent_files.size(), 4);
for (int i = 0; i < num_recent_files; i++) {
recent_file_actions_[i]->setEnabled(false);
}
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::enable_possible_actions() {
// export / save / new / open
bool analysis_ready = session_->particles_present();
bool original_present = session_->get_project()->get_originals_present();
auto filename = session_->get_filename();
bool save_enabled = filename == "" || filename.endsWith(".xlsx", Qt::CaseInsensitive) ||
filename.endsWith(".swproj", Qt::CaseInsensitive);
ui_->action_save_project->setEnabled(save_enabled);
ui_->menu_save_project_as->setEnabled(true);
ui_->actionExport_PCA_Mesh->setEnabled(analysis_ready);
ui_->actionExport_Eigenvalues->setEnabled(analysis_ready);
ui_->actionExport_Eigenvectors->setEnabled(analysis_ready);
ui_->actionExport_PCA_Mode_Points->setEnabled(analysis_ready);
ui_->action_new_project->setEnabled(true);
ui_->action_open_project->setEnabled(true);
ui_->action_import->setEnabled(true);
ui_->menuExport->setEnabled(true);
// available modes
ui_->action_import_mode->setEnabled(true);
ui_->action_groom_mode->setEnabled(original_present);
ui_->action_optimize_mode->setEnabled(original_present);
bool new_analysis = false;
if (!ui_->action_analysis_mode->isEnabled() && analysis_ready) {
new_analysis = true;
}
ui_->action_analysis_mode->setEnabled(analysis_ready);
ui_->action_deepssm_mode->setEnabled(session_->get_project()->get_images_present() && original_present);
ui_->action_monai_mode->setEnabled(session_->get_project()->get_images_present());
// verification step for broken projects
if (session_->get_tool_state() == Session::DEEPSSM_C && !ui_->action_deepssm_mode->isEnabled()) {
session_->set_tool_state(Session::DATA_C);
ui_->action_import_mode->setChecked(true);
}
if (session_->get_tool_state() == Session::MONAI_C && !ui_->action_monai_mode->isEnabled()) {
session_->set_tool_state(Session::MONAI_C);
ui_->action_import_mode->setChecked(true);
}
// subtools
data_tool_->enable_actions();
groom_tool_->enable_actions();
optimize_tool_->enable_actions();
analysis_tool_->enable_actions(new_analysis);
monai_tool_->enable_actions();
// recent
QStringList recent_files = preferences_.get_recent_files();
int num_recent_files = qMin(recent_files.size(), 8);
for (int i = 0; i < num_recent_files; i++) {
recent_file_actions_[i]->setEnabled(true);
}
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::update_from_preferences() {
ui_->center_checkbox->setChecked(preferences_.get_center_checked());
if (session_) {
ui_->feature_uniform_scale->setChecked(get_feature_uniform_scale());
ui_->feature_auto_scale->setChecked(session_->get_feature_auto_scale());
ui_->planes_visible_button_->setChecked(session_->get_show_planes());
ui_->feature_min->setValue(session_->get_feature_range_min());
ui_->feature_max->setValue(session_->get_feature_range_max());
}
groom_tool_->load_params();
optimize_tool_->load_params();
analysis_tool_->load_settings();
deepssm_tool_->load_params();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::update_scrollbar() {
int num_rows = lightbox_->get_num_rows();
int num_visible = lightbox_->get_num_rows_visible();
if (num_visible >= num_rows) {
ui_->vertical_scroll_bar->setMaximum(0);
ui_->vertical_scroll_bar->setEnabled(false);
} else {
ui_->vertical_scroll_bar->setEnabled(true);
ui_->vertical_scroll_bar->setMaximum(num_rows - num_visible);
ui_->vertical_scroll_bar->setPageStep(num_visible);
}
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::on_vertical_scroll_bar_valueChanged() {
int value = ui_->vertical_scroll_bar->value();
lightbox_->set_start_row(value);
visualizer_->update_viewer_properties();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::update_table() {
auto project = session_->get_project();
data_tool_->update_table();
// update feature combobox if the list has changed
QStringList feature_list;
auto current_feature = ui_->features->currentText();
feature_list << "-none-";
auto feature_maps = project->get_feature_names();
for (const std::string& feature : feature_maps) {
feature_list << QString::fromStdString(feature);
}
if (feature_list != current_features_) {
ui_->features->clear();
ui_->features->addItems(feature_list);
ui_->features->setCurrentText(current_feature);
current_features_ = feature_list;
}
ui_->feature_uniform_scale->setChecked(get_feature_uniform_scale());
// update image combobox if the list has changed
QStringList image_list;
image_list << "-none-";
auto image_names = project->get_image_names();
for (const std::string& name : image_names) {
QString item = QString::fromStdString(name);
item = item.replace("feature_", "");
image_list << item;
}
if (image_list != current_image_list_) {
ui_->image_combo_->clear();
ui_->image_combo_->addItems(image_list);
current_image_list_ = image_list;
}
ui_->image_combo_->setCurrentText(QString::fromStdString(session_->get_image_name()));
session_->set_image_name(ui_->image_combo_->currentText().toStdString());
ui_->image_widget->setVisible(!image_names.empty());
ui_->image_axis_->setCurrentText(QString::fromStdString(axisToString(session_->get_image_axis())));
ui_->image_3d_mode_->setChecked(session_->get_image_3d_mode());
ui_->image_share_window_and_level_->setChecked(session_->get_image_share_brightness_contrast());
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_pca_changed() {
if (!session_->particles_present()) {
return;
}
session_->handle_clear_cache();
visualizer_->update_lut();
display_mode_shape();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_slider_update() { analysis_tool_->update_slider(); }
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_mca_changed() {
if (!session_->particles_present()) {
return;
}
session_->handle_clear_cache();
visualizer_->update_lut();
display_mode_shape();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_pca_update() {
if (analysis_tool_->get_active() && analysis_tool_->get_analysis_mode() == AnalysisTool::MODE_PCA_C) {
display_mode_shape();
}
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::clear_message() { current_message_ = ""; }
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_message(std::string str) {
assert(QThread::currentThread() == QCoreApplication::instance()->thread());
QString qstr = QString::fromStdString(str);
if (qstr != current_message_) {
set_message(MessageType::normal, qstr);
} else {
status_bar_->set_message(MessageType::normal, qstr);
}
current_message_ = qstr;
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_status(std::string str) {
auto qstr = QString::fromStdString(str);
status_bar_->set_message(MessageType::normal, qstr);
current_message_ = qstr;
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_error(std::string str) {
auto qstr = QString::fromStdString(str);
set_message(MessageType::error, qstr);
current_message_ = qstr;
error_message_dialog_.showMessage("Error:\n" + qstr, "error");
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_warning(std::string str) {
auto qstr = QString::fromStdString(str);
set_message(MessageType::warning, qstr);
current_message_ = qstr;
error_message_dialog_.showMessage("Warning:\n" + qstr, "warning");
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_debug(std::string str) {
auto qstr = QString::fromStdString(str);
set_message(MessageType::debug, qstr);
current_message_ = qstr;
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::message_callback(std::string str) {
QMetaObject::invokeMethod(
this, [&]() { handle_message(str); }, Qt::QueuedConnection);
// QMetaObject::invokeMethod(this,)
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_progress_with_message(int value, std::string str) {
handle_progress(value);
if (str != "") {
handle_status(str);
}
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_progress(int value) { status_bar_->set_progress(value); }
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::set_message(MessageType message_type, QString message) {
status_bar_->set_message(message_type, message);
log_window_.add_message(message_type, message);
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::create_glyph_submenu() {
// Glyph options in the render window.
QMenu* menu = new QMenu();
QWidget* widget = new QWidget();
QGridLayout* layout = new QGridLayout(widget);
QLabel* size_label = new QLabel("Glyph Size: ");
layout->addWidget(size_label, 0, 0, 1, 1);
size_label = new QLabel("Glyph Detail: ");
layout->addWidget(size_label, 1, 0, 1, 1);
glyph_quality_label_ = new QLabel("....");
glyph_quality_label_->setMinimumWidth(50);
glyph_size_label_ = new QLabel("....");
glyph_size_label_->setMinimumWidth(50);
layout->addWidget(glyph_size_label_, 0, 1, 1, 1);
layout->addWidget(glyph_quality_label_, 1, 1, 1, 1);
glyph_size_slider_ = new CustomSlider(widget);
glyph_size_slider_->setOrientation(Qt::Horizontal);
glyph_size_slider_->setMinimum(1);
glyph_size_slider_->setMaximum(100);
glyph_size_slider_->setPageStep(10);
glyph_size_slider_->setTickPosition(QSlider::TicksBelow);
glyph_size_slider_->setTickInterval(10);
glyph_size_slider_->setMinimumWidth(200);
glyph_auto_size_ = new QCheckBox("Auto");
glyph_arrow_scale_ = new QCheckBox("Scale arrows");
glyph_quality_slider_ = new CustomSlider(widget);
glyph_quality_slider_->setMinimum(1);
glyph_quality_slider_->setMaximum(20);
glyph_quality_slider_->setPageStep(3);
glyph_quality_slider_->setOrientation(Qt::Horizontal);
glyph_quality_slider_->setTickPosition(QSlider::TicksBelow);
glyph_quality_slider_->setTickInterval(1);
glyph_quality_slider_->setMinimumWidth(200);
layout->addWidget(glyph_size_slider_, 0, 2, 1, 1);
layout->addWidget(glyph_auto_size_, 0, 3, 1, 1);
layout->addWidget(glyph_quality_slider_, 1, 2, 1, 1);
layout->addWidget(glyph_arrow_scale_, 2, 0, 1, 1);
widget->setLayout(layout);
glyph_quality_slider_->setValue(preferences_.get_glyph_quality());
glyph_size_slider_->setValue(preferences_.get_glyph_size() * 10.0);
glyph_auto_size_->setChecked(preferences_.get_glyph_auto_size());
glyph_arrow_scale_->setChecked(preferences_.get_glyph_scale_arrows());
glyph_size_slider_->setEnabled(!glyph_auto_size_->isChecked());
glyph_quality_label_->setText(QString::number(preferences_.get_glyph_quality()));
glyph_size_label_->setText(QString::number(preferences_.get_glyph_size()));
connect(glyph_size_slider_, &CustomSlider::valueChanged, this, &ShapeWorksStudioApp::handle_glyph_changed);
connect(glyph_quality_slider_, &CustomSlider::valueChanged, this, &ShapeWorksStudioApp::handle_glyph_changed);
connect(glyph_auto_size_, &QCheckBox::clicked, this, &ShapeWorksStudioApp::handle_glyph_changed);
connect(glyph_arrow_scale_, &QCheckBox::clicked, this, &ShapeWorksStudioApp::handle_glyph_changed);
if (!session_) {
return;
}
auto project = session_->get_project();
auto domain_names = project->get_domain_names();
domain_particle_checkboxes_.clear();
if (domain_names.size() > 1) {
auto line = new QFrame(widget);
line->setObjectName(QString::fromUtf8("line"));
line->setGeometry(QRect(320, 150, 118, 3));
line->setFrameShape(QFrame::HLine);
line->setFrameShadow(QFrame::Sunken);
layout->addWidget(line, 3, 0, 1, 4);
int row = 4;
for (const auto& name : domain_names) {
auto checkbox = new QCheckBox("Show " + QString::fromStdString(name), widget);
checkbox->setChecked(true);
connect(checkbox, &QCheckBox::clicked, this, &ShapeWorksStudioApp::handle_glyph_changed);
domain_particle_checkboxes_.push_back(checkbox);
layout->addWidget(checkbox, row, 0);
row++;
}
}
QWidgetAction* widget_action = new QWidgetAction(widget);
widget_action->setDefaultWidget(widget);
menu->addAction(widget_action);
ui_->glyphs_visible_button->setMenu(menu);
glyph_quality_label_->setText(QString::number(preferences_.get_glyph_quality()));
glyph_size_label_->setText(QString::number(preferences_.get_glyph_size()));
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::create_iso_submenu() {
// Glyph options in the render window.
QMenu* menu = new QMenu();
QWidget* widget = new QWidget();
QGridLayout* layout = new QGridLayout(widget);
if (!session_) {
return;
}
auto project = session_->get_project();
auto names = project->get_domain_names();
iso_opacity_sliders_.clear();
for (size_t row = 0; row < names.size(); row++) {
auto name = names[row];
QString text = "Opacity";
if (names.size() > 1) {
text = QString::fromStdString(name) + " opacity: ";
}
QLabel* size_label = new QLabel(text);
layout->addWidget(size_label, row, 0, 1, 1);
CustomSlider* slider = new CustomSlider(widget);
slider->setOrientation(Qt::Horizontal);
slider->setMinimum(1);
slider->setMaximum(100);
slider->setPageStep(10);
slider->setTickPosition(QSlider::TicksBelow);
slider->setTickInterval(10);
slider->setValue(100);
slider->setMinimumWidth(200);
connect(slider, &CustomSlider::valueChanged, this, &ShapeWorksStudioApp::handle_opacity_changed);
layout->addWidget(slider, row, 1, 1, 1);
widget->setLayout(layout);
iso_opacity_sliders_.push_back(slider);
}
QWidgetAction* widget_action = new QWidgetAction(widget);
widget_action->setDefaultWidget(widget);
menu->addAction(widget_action);
ui_->surface_visible_button->setMenu(menu);
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::create_compare_submenu() {
compare_widget_ = new CompareWidget(this);
connect(compare_widget_, &CompareWidget::settings_changed, this,
&ShapeWorksStudioApp::handle_compare_settings_changed);
connect(ui_->compare, &QToolButton::toggled, this, &ShapeWorksStudioApp::handle_compare_settings_changed);
QMenu* menu = new QMenu();
QWidgetAction* widget_action = new QWidgetAction(compare_widget_);
widget_action->setDefaultWidget(compare_widget_);
menu->addAction(widget_action);
ui_->compare->setMenu(menu);
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::update_window_title() {
if (!session_) {
return;
}
setWindowTitle(session_->get_display_name());
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_new_mesh() {
visualizer_->handle_new_mesh();
std::string mode = AnalysisTool::MODE_ALL_SAMPLES_C;
if (ui_->action_analysis_mode->isChecked()) {
mode = analysis_tool_->get_analysis_mode();
}
if (visualizer_->get_feature_map() != "" && mode == AnalysisTool::MODE_MEAN_C) {
visualizer_->display_shape(analysis_tool_->get_mean_shape());
}
deepssm_tool_->handle_new_mesh();
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_clear_cache() {
handle_pca_changed();
handle_mca_changed();
if (session_) {
session_->handle_clear_cache();
}
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_compare_settings_changed() {
if (session_) {
auto settings = compare_widget_->get_settings();
settings.compare_enabled_ = ui_->compare->isChecked();
session_->set_compare_settings(settings);
}
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::handle_lightbox_right_click(int index) {
auto shapes = visualizer_->get_lightbox()->get_shapes();
if (index >= shapes.size()) {
return;
}
auto shape = shapes[index];
QMenu* menu = new QMenu(nullptr);
menu->setAttribute(Qt::WA_DeleteOnClose);
QAction* export_mesh_action = menu->addAction("Export Mesh");
QAction* mark_excluded_action = nullptr;
QAction* unmark_excluded_action = nullptr;
QAction* mark_fixed_action = nullptr;
QAction* unmark_fixed_action = nullptr;
if (shape->is_subject() && !shape->is_excluded()) {
mark_excluded_action = menu->addAction("Mark as excluded");
}
if (shape->is_subject() && shape->is_excluded()) {
unmark_excluded_action = menu->addAction("Unmark as excluded");
}
if (shape->is_subject() && !shape->is_fixed()) {
mark_fixed_action = menu->addAction("Mark as fixed");
}
if (shape->is_subject() && shape->is_fixed()) {
unmark_fixed_action = menu->addAction("Unmark as fixed");
}
menu->popup(QCursor::pos());
connect(menu, &QMenu::triggered, menu, [=](QAction* action) {
if (action == export_mesh_action) {
action_export_current_mesh_triggered(index);
} else if (action == mark_excluded_action) {
shape->get_subject()->set_excluded(true);
} else if (action == unmark_excluded_action) {
shape->get_subject()->set_excluded(false);
} else if (action == mark_fixed_action) {
shape->get_subject()->set_fixed(true);
} else if (action == unmark_fixed_action) {
shape->get_subject()->set_fixed(false);
}
shape->update_annotations();
session_->get_project()->update_subjects();
session_->trigger_reinsert_shapes();
data_tool_->update_table();
});
}
//---------------------------------------------------------------------------
void ShapeWorksStudioApp::new_session() {
session_ = QSharedPointer<Session>::create(this, preferences_);
session_->set_parent(this);
session_->set_py_worker(get_py_worker());
update_window_title();
connect(session_->get_mesh_manager().get(), &MeshManager::progress, this, &ShapeWorksStudioApp::handle_progress);
connect(session_->get_mesh_manager().get(), &MeshManager::status, this, &ShapeWorksStudioApp::handle_status);
connect(session_.data(), &Session::data_changed, this, &ShapeWorksStudioApp::handle_project_changed);
connect(session_.data(), &Session::points_changed, this, &ShapeWorksStudioApp::handle_points_changed);
connect(session_.data(), &Session::reset_stats, this, &ShapeWorksStudioApp::handle_reset_stats);
connect(session_.data(), &Session::update_display, this, &ShapeWorksStudioApp::handle_display_setting_changed);