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Overview

tapestriR is an R package for DNA and DNA + Protein analysis of data generated by the Tapestri platform. For additional documentation and tutorials visit: https://missionbio.github.io/tapestriR/

Installation

Not compatible with R >= 4.0.0. Please use R 3.6.x.

  1. Install devtools and BiocManager.
  2. Install TaprestriR.
  3. Start with tutorials: https://missionbio.github.io/tapestriR/

Packages needed to run the vignettes

install.packages(c("devtools", "BiocManager", "tidyverse", "patchwork", "factoextra",  "NbClust", "uwot"))

Some users have reported defficultly in installing rhdf5. Users reported better luck using anaconda. Additional documentation for rhdf5: https://www.bioconductor.org/packages/release/bioc/html/rhdf5.html

BiocManager::install("rhdf5")

Install the tapestriR package

devtools::install_github("MissionBio/tapestri_multiomics")

Start using it.

require(TapestriR)

For tutorials visit: https://missionbio.github.io/tapestriR/

Usage

The purpose of this package is to enable easy loading of Tapestri data from various sources. The vignettes offer multiple examples of how to analyze these data, but it’s left to the user to explore the wide range of our packages to gain insights. For an easy-to-use solution, check out Tapestri Insights at https://portal.missionbio.com/.

Getting help

If you have any questions or need more information about this R package or the methods it implements, please contact Anup at [email protected]. You can also post questions to the github repository.

License

AGPL-3