Commits

Commits on May 21, 2024

Add --anchor-samples option to add specific sequences to subtrees
AngieHinrichs
committed

Commits on Apr 30, 2024

Update LICENSE
russcd
authored

Commits on Mar 6, 2024

Enable auspice radial view
aofarrel
authored

Commits on Nov 17, 2023

Commits on Nov 2, 2023

Merge pull request yatisht#357 from AngieHinrichs/collapse_and_fix
yatisht
authored

Commits on Nov 1, 2023

New matUtils subcommand fix: finds nodes whose only mutation is a reversion of their grandparent's only mutation, a pattern that causes trouble for several Pango lineages, and moves those nodes to …
AngieHinrichs
committed
1. Performance tweak in restrictMutationsLocally (--mask-mutations): for each masked site, instead of copying all mutations that aren't masked, which is almost all mutations in the branch, make a u…
AngieHinrichs
committed
In move_node, search for an existing child of the destination (new parent) that already has the same mutation(s) as the node to be moved. If a child with the same mutations is found then merge the …
AngieHinrichs
committed
Update cmake.yml
yatisht
authored
Update version.txt
yatisht
authored
Removng Ubuntu 18.04 from the GH actions
yatisht
authored

Commits on Oct 20, 2023

Merge pull request yatisht#355 from yceh/master
yatisht
authored

Commits on Oct 19, 2023

fix missing root in fixed tree search
yceh
committed

Commits on May 9, 2023

Commits on May 6, 2023

Commits on May 5, 2023

print epps_newick
yceh
committed

Commits on Apr 13, 2023

fix getting root mutation
yceh
committed

Commits on Mar 29, 2023

Merge pull request yatisht#334 from yceh/master
yatisht
authored

Commits on Mar 13, 2023

fix optimization termination condition
yceh
committed

Commits on Mar 11, 2023

Commits on Feb 23, 2023

Merge pull request yatisht#331 from yceh/master
yatisht
authored

Commits on Feb 22, 2023