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Commits on Mar 17, 2023

• move MM_VERSION define to minimap.h

  

  iiSeymour

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  lh3

  committed
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Commits on Feb 14, 2023

• Add HD header ilne to SAM output

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  nh13

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  lh3

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Commits on Jan 17, 2023

• r1155: fixed a bug on parsing --rmq

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  lh3

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Commits on Jan 6, 2023

• removed debugging code

  lh3

  committed
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Commits on Nov 30, 2022

• fixed a wrong comment. Resolves lh3#997

  lh3

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Commits on Nov 2, 2022

• r1152: evaluate base Sn and Sp

  lh3

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• r1151: added exoneval

  lh3

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Commits on Oct 22, 2022

• r1150: the prev impl counted one less submer

  lh3

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Commits on Oct 21, 2022

• r1149: implemented random open syncmer

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  lh3

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• removed -b0 (a typo)

  lh3

  committed
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Commits on Oct 7, 2022

• support ##PAF lines in GFF3

  lh3

  committed
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Commits on Sep 21, 2022

• extract junctions from GFF

  lh3

  committed
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Commits on Sep 11, 2022

• junceval for plain junction BED as input

  lh3

  committed
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Commits on Sep 10, 2022

• skip unmapped lines

  lh3

  committed
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Commits on Sep 9, 2022

• r1141: junceval to support miniprot output

  lh3

  committed
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• sync with tag changes in miniprot

  lh3

  committed
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• output CDS and stop_codon

  lh3

  committed
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• output dist from end instead

  lh3

  committed
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• output more info

  lh3

  committed
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• added paf2gff

  lh3

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Commits on Jul 19, 2022

• added longcs2fa

  lh3

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Commits on Jun 13, 2022

• clarify multi-part index in option -I (lh3#301)

  lh3

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Commits on May 14, 2022

• option to keep Ensembl_canonical only

  lh3

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Commits on May 12, 2022

• r1132: document misjoin output

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  lh3

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Commits on Mar 1, 2022

• added the second minimap2 paper

  lh3

  committed
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• removed travis CI

  lh3

  committed
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• Fix indentation

  

  cjw85

  authored and

  lh3

  committed
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• fix undefined variable

  

  cjw85

  authored and

  lh3

  committed
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• Build mappy via Makefile and libminimap2.a

  

  cjw85

  authored and

  lh3

  committed
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Commits on Dec 26, 2021

• typo on simde

  lh3

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• Release minimap2-2.24 (r1122)

  lh3

  committed
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• r1121: change bw_long to bw if bw is longer

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  lh3

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• r1121: updated obsolete settings in manpage

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  lh3

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Commits on Dec 25, 2021

• r1119: fixed a typo in the new chaining code

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  lh3

  committed
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Commits on Dec 24, 2021

• r1118: use -r1k,100k for asm* modes

  lh3

  committed
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